RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 ASIC1P78348 528 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 CASP8Q14790 479 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 TRAPPC11Q7Z392 1133 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 FAN1Q9Y2M0 1017 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 A0A1W2PQC6 194 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 LRRIQ3A6PVS8 624 aaPredicted RBP17.69■□□□□ 0.42
LDLR-204ENST00000545707 NFIXQ14938 502 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 FAM98CQ17RN3 349 aaKnown RBP17.69■□□□□ 0.42
LDLR-204ENST00000545707 KIAA1328Q86T90 577 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 GDAP1L1Q96MZ0 367 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 TRIM9Q9C026 710 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 EXOC1Q9NV70 894 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 PALM3A6NDB9 673 aaPredicted RBP17.69■□□□□ 0.42
LDLR-204ENST00000545707 ZNF185O15231 689 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 SRGNP10124 158 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 RASA1P20936 1047 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 DNM2P50570 870 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 TXLNBQ8N3L3 684 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 CCDC148Q8NFR7 591 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 CNOT6LQ96LI5 555 aaKnown RBP17.69■□□□□ 0.42
LDLR-204ENST00000545707 HAUS4Q9H6D7 363 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 TCP11L1Q9NUJ3 509 aa17.69■□□□□ 0.42
LDLR-204ENST00000545707 SPATA31A5Q5VU36 1347 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 SPATA31A7Q8IWB4 1347 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 SMCO2A6NFE2 343 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 GNPATO15228 680 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 PLEKP08567 350 aaPredicted RBP17.68■□□□□ 0.42
LDLR-204ENST00000545707 MTIF2P46199 727 aaKnown RBP17.68■□□□□ 0.42
LDLR-204ENST00000545707 GNAQP50148 359 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 GPS2Q13227 327 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 SPTY2D1Q68D10 685 aaPredicted RBP17.68■□□□□ 0.42
LDLR-204ENST00000545707 KRT26Q7Z3Y9 468 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 ANKS1AQ92625 1134 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 P2RX5Q93086 422 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 CCDC102AQ96A19 550 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 NHEJ1Q9H9Q4 299 aaPredicted RBP17.68■□□□□ 0.42
LDLR-204ENST00000545707 RREB1Q92766 1687 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 MACROD2A1Z1Q3 448 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 PSMD14O00487 310 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 JAKMIP2Q96AA8 810 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 TTYH3Q9C0H2 523 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 NYXQ9GZU5 481 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 UBA5Q9GZZ9 404 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 SLC39A2Q9NP94 309 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 TMEM260Q9NX78 707 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 BIN2Q9UBW5 565 aaPredicted RBP17.68■□□□□ 0.42
LDLR-204ENST00000545707 SAR1BQ9Y6B6 198 aa17.68■□□□□ 0.42
LDLR-204ENST00000545707 KIAA1551Q9HCM1 1747 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 IRS2Q9Y4H2 1338 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 ZPR1O75312 459 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 OR52Z1P0C646 297 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 TPTE2Q6XPS3 522 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 DAGLBQ8NCG7 672 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 SMCR8Q8TEV9 937 aaPredicted RBP17.67■□□□□ 0.42
LDLR-204ENST00000545707 NOC4LQ9BVI4 516 aaKnown RBP17.67■□□□□ 0.42
LDLR-204ENST00000545707 NARFQ9UHQ1 456 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 COL22A1Q8NFW1 1626 aaPredicted RBP17.67■□□□□ 0.42
LDLR-204ENST00000545707 CCNE1P24864 410 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 ZSCAN26Q16670 478 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 FAM182BQ5T319 152 aa17.67■□□□□ 0.42
LDLR-204ENST00000545707 DHTKD1Q96HY7 919 aaPredicted RBP17.67■□□□□ 0.42
LDLR-204ENST00000545707 ZFP91Q96JP5 570 aaPredicted RBP17.67■□□□□ 0.42
LDLR-204ENST00000545707 TXKP42681 527 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 MEA1Q16626 185 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 MIIPQ5JXC2 388 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 POTEDQ86YR6 584 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 GSPT2Q8IYD1 628 aaKnown RBP17.66■□□□□ 0.42
LDLR-204ENST00000545707 TBCKQ8TEA7 893 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 PIGSQ96S52 555 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 MMTAG2Q9BU76 263 aaKnown RBP17.66■□□□□ 0.42
LDLR-204ENST00000545707 ZMYND12Q9H0C1 365 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 KDM4FA0A1W2PPD8 638 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 PDE2AO00408 941 aaPredicted RBP17.66■□□□□ 0.42
LDLR-204ENST00000545707 IRX5P78411 483 aaPredicted RBP17.66■□□□□ 0.42
LDLR-204ENST00000545707 NONOQ15233 471 aaKnown RBP eCLIP17.66■□□□□ 0.425e-7■□□□□ 10.7
LDLR-204ENST00000545707 KIAA0895Q8NCT3 520 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 EXOC4Q96A65 974 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 EYA3Q99504 573 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 SEMA6BQ9H3T3 888 aa17.66■□□□□ 0.42
LDLR-204ENST00000545707 ZNF263O14978 683 aa17.65■□□□□ 0.42
LDLR-204ENST00000545707 EPHB6O15197 1021 aa17.65■□□□□ 0.42
LDLR-204ENST00000545707 USP14P54578 494 aa17.65■□□□□ 0.42
LDLR-204ENST00000545707 KRT83P78385 493 aa17.65■□□□□ 0.42
LDLR-204ENST00000545707 DYMQ7RTS9 669 aa17.65■□□□□ 0.42
LDLR-204ENST00000545707 AMOTL1Q8IY63 956 aa17.65■□□□□ 0.42
LDLR-204ENST00000545707 ZNHIT6Q9NWK9 470 aaKnown RBP17.65■□□□□ 0.42
LDLR-204ENST00000545707 KRT86O43790 486 aa17.64■□□□□ 0.42
LDLR-204ENST00000545707 BAG3O95817 575 aa17.64■□□□□ 0.42
LDLR-204ENST00000545707 PRPHP41219 470 aa17.64■□□□□ 0.42
LDLR-204ENST00000545707 CDK8P49336 464 aa17.64■□□□□ 0.42
LDLR-204ENST00000545707 WDR66Q8TBY9 1149 aa17.64■□□□□ 0.42
LDLR-204ENST00000545707 LAMB1P07942 1786 aa17.64■□□□□ 0.42
LDLR-204ENST00000545707 WNK3Q9BYP7 1800 aa17.64■□□□□ 0.41
LDLR-204ENST00000545707 EIF3JO75822 258 aaKnown RBP17.64■□□□□ 0.41
LDLR-204ENST00000545707 MYL1P05976 194 aa17.64■□□□□ 0.41
LDLR-204ENST00000545707 CYLC1P35663 651 aaPredicted RBP17.64■□□□□ 0.41
LDLR-204ENST00000545707 TNNT3P45378 269 aaPredicted RBP17.64■□□□□ 0.41
LDLR-204ENST00000545707 ZBED6P86452 979 aa17.64■□□□□ 0.41
LDLR-204ENST00000545707 ATP2B2Q01814 1243 aa17.64■□□□□ 0.41
LDLR-204ENST00000545707 GALNT17Q6IS24 598 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms