RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 ALDH8A1Q9H2A2 487 aaPredicted RBP11.29□□□□□ -0.6
CHD4-212ENST00000545083 PDGFCQ9NRA1 345 aa11.29□□□□□ -0.6
CHD4-212ENST00000545083 HOMER2Q9NSB8 354 aa11.29□□□□□ -0.6
CHD4-212ENST00000545083 GREB1LQ9C091 1923 aaPredicted RBP11.29□□□□□ -0.6
CHD4-212ENST00000545083 ZNF316A6NFI3 1004 aaPredicted RBP11.28□□□□□ -0.6
CHD4-212ENST00000545083 RASA1P20936 1047 aa11.28□□□□□ -0.6
CHD4-212ENST00000545083 GRB10Q13322 594 aa11.28□□□□□ -0.6
CHD4-212ENST00000545083 ZKSCAN2Q63HK3 967 aa11.28□□□□□ -0.6
CHD4-212ENST00000545083 CHST13Q8NET6 341 aa11.28□□□□□ -0.6
CHD4-212ENST00000545083 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.28□□□□□ -0.6
CHD4-212ENST00000545083 A1CFQ9NQ94 594 aaKnown RBP11.28□□□□□ -0.6
CHD4-212ENST00000545083 TRMT13Q9NUP7 481 aaKnown RBP11.28□□□□□ -0.6
CHD4-212ENST00000545083 NYAP2Q9P242 653 aa11.28□□□□□ -0.6
CHD4-212ENST00000545083 FBXO40Q9UH90 709 aa11.28□□□□□ -0.6
CHD4-212ENST00000545083 IGKV6D-41A0A0C4DH26 115 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 RLBP1P12271 317 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 TAPT1Q6NXT6 567 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 EEPD1Q7L9B9 569 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 ERC1Q8IUD2 1116 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 AMOTL1Q8IY63 956 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 STK11IPQ8N1F8 1099 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 RHPN1Q8TCX5 695 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 PPP1R13LQ8WUF5 828 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 AP5M1Q9H0R1 490 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 PAG1Q9NWQ8 432 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 CLIP2Q9UDT6 1046 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 CTDP1Q9Y5B0 961 aaPredicted RBP11.27□□□□□ -0.61
CHD4-212ENST00000545083 SLC4A4Q9Y6R1 1079 aa11.27□□□□□ -0.61
CHD4-212ENST00000545083 SCN5AQ14524 2016 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 RBAK-RBAKDNI3L0D1 243 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 PFKMP08237 780 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 OAZ1P54368 228 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 HERC6Q8IVU3 1022 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 ITPRIPQ8IWB1 547 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 FBXO16Q8IX29 292 aaPredicted RBP11.26□□□□□ -0.61
CHD4-212ENST00000545083 SLC9A7Q96T83 725 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 SEZ6LQ9BYH1 1024 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 PUS7LQ9H0K6 701 aaKnown RBP11.26□□□□□ -0.61
CHD4-212ENST00000545083 BOLA2Q9H3K6 86 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 FEM1BQ9UK73 627 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 TNKSO95271 1327 aa11.26□□□□□ -0.61
CHD4-212ENST00000545083 LCHNA4D1U4 455 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 ZEB2O60315 1214 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 MRE11P49959 708 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 IQSEC1Q6DN90 963 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 LRRC47Q8N1G4 583 aaKnown RBP11.25□□□□□ -0.61
CHD4-212ENST00000545083 PHOSPHO2Q8TCD6 241 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 PURBQ96QR8 312 aaKnown RBP11.25□□□□□ -0.61
CHD4-212ENST00000545083 BCL11AQ9H165 835 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 ACAD9Q9H845 621 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 RNF146Q9NTX7 359 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 ARPP21Q9UBL0 812 aaPredicted RBP11.25□□□□□ -0.61
CHD4-212ENST00000545083 COG6Q9Y2V7 657 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 ZNF536O15090 1300 aa11.25□□□□□ -0.61
CHD4-212ENST00000545083 TET1Q8NFU7 2136 aa11.24□□□□□ -0.61
CHD4-212ENST00000545083 ASB14A6NK59 587 aa11.24□□□□□ -0.61
CHD4-212ENST00000545083 PRR33A8MZF0 331 aa11.24□□□□□ -0.61
CHD4-212ENST00000545083 PURAQ00577 322 aaKnown RBP11.24□□□□□ -0.61
CHD4-212ENST00000545083 UBE3CQ15386 1083 aa11.24□□□□□ -0.61
CHD4-212ENST00000545083 TMCO2Q7Z6W1 182 aaPredicted RBP11.24□□□□□ -0.61
CHD4-212ENST00000545083 GDPD5Q8WTR4 605 aa11.24□□□□□ -0.61
CHD4-212ENST00000545083 MKL1Q969V6 931 aa11.24□□□□□ -0.61
CHD4-212ENST00000545083 CEP95Q96GE4 821 aa11.24□□□□□ -0.61
CHD4-212ENST00000545083 DDRGK1Q96HY6 314 aa11.24□□□□□ -0.61
CHD4-212ENST00000545083 Q9Y3F1 56 aa11.24□□□□□ -0.61
CHD4-212ENST00000545083 COL4A4P53420 1690 aaPredicted RBP11.24□□□□□ -0.61
CHD4-212ENST00000545083 GSG1L2A8MUP6 293 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 TMEM232C9JQI7 657 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 PRDM1O75626 825 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 IFIT2P09913 472 aaKnown RBP11.23□□□□□ -0.61
CHD4-212ENST00000545083 IQCF3P0C7M6 154 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 SUPT20HL2P0C7V6 817 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 ACTN1P12814 892 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 SBK1Q52WX2 424 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 MUM1L1Q5H9M0 696 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 KIAA1211Q6ZU35 1233 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 FAM178BQ8IXR5 827 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 FTSJ3Q8IY81 847 aaKnown RBP11.23□□□□□ -0.61
CHD4-212ENST00000545083 GJD3Q8N144 294 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 CLASRPQ8N2M8 674 aaKnown RBP11.23□□□□□ -0.61
CHD4-212ENST00000545083 GMCL1P1Q8NEA9 526 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 CHMP4CQ96CF2 233 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 FTOQ9C0B1 505 aaKnown RBP eCLIP11.23□□□□□ -0.61
CHD4-212ENST00000545083 UBE2ZQ9H832 354 aaPredicted RBP11.23□□□□□ -0.61
CHD4-212ENST00000545083 MKNK2Q9HBH9 465 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 MTMR4Q9NYA4 1195 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 WDFY4Q6ZS81 3184 aa11.23□□□□□ -0.61
CHD4-212ENST00000545083 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.22□□□□□ -0.61
CHD4-212ENST00000545083 MINDY4BA8MYZ0 360 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 KIF28PB7ZC32 967 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 MYL3P08590 195 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 BMP3P12645 472 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 ALAS1P13196 640 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 IL9P15248 144 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 ATP5JP18859 108 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 RFC2P35250 354 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 SNAP25P60880 206 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 NHLH1Q02575 133 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 NBPF20Q3BBV1 942 aa11.22□□□□□ -0.61
CHD4-212ENST00000545083 DUSP28Q4G0W2 176 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms