RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 FILIP1Q7Z7B0 1213 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 REXO1Q8N1G1 1221 aaKnown RBP16.25■□□□□ 0.19
VPS33A-209ENST00000544349 NAT10Q9H0A0 1025 aaKnown RBP16.25■□□□□ 0.19
VPS33A-209ENST00000544349 DEFB129Q9H1M3 183 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 BIN2Q9UBW5 565 aaPredicted RBP16.25■□□□□ 0.19
VPS33A-209ENST00000544349 USP27XA6NNY8 438 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 TMEM232C9JQI7 657 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 ASNSP08243 561 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 ADCY7P51828 1080 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 NONOQ15233 471 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS33A-209ENST00000544349 BTNL9Q6UXG8 535 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 C4orf32Q8N8J7 132 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 GOPCQ9HD26 462 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.25■□□□□ 0.19
VPS33A-209ENST00000544349 ATAD5Q96QE3 1844 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 CCZ1BP86790 482 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 CCZ1P86791 482 aaPredicted RBP16.24■□□□□ 0.19
VPS33A-209ENST00000544349 PNOCQ13519 176 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 CDC37Q16543 378 aaPredicted RBP16.24■□□□□ 0.19
VPS33A-209ENST00000544349 KIAA1755Q5JYT7 1200 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 SYDE2Q5VT97 1194 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 SPICE1Q8N0Z3 855 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 BPIFA3Q9BQP9 254 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 PDCL3Q9H2J4 239 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 RIC8AQ9NPQ8 531 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 JAKMIP3Q5VZ66 844 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 ARL6IP4Q66PJ3 421 aaKnown RBP16.24■□□□□ 0.19
VPS33A-209ENST00000544349 USP49Q70CQ1 688 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 TRPM4Q8TD43 1214 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 TMEM260Q9NX78 707 aa16.24■□□□□ 0.19
VPS33A-209ENST00000544349 IKQ13123 557 aaPredicted RBP16.23■□□□□ 0.19
VPS33A-209ENST00000544349 LONRF3Q496Y0 759 aa16.23■□□□□ 0.19
VPS33A-209ENST00000544349 ANGEL2Q5VTE6 544 aaKnown RBP16.23■□□□□ 0.19
VPS33A-209ENST00000544349 KRBA2Q6ZNG9 492 aa16.23■□□□□ 0.19
VPS33A-209ENST00000544349 XPO4Q9C0E2 1151 aaKnown RBP16.23■□□□□ 0.19
VPS33A-209ENST00000544349 HSD3B7Q9H2F3 369 aa16.23■□□□□ 0.19
VPS33A-209ENST00000544349 SH2D4AQ9H788 454 aa16.23■□□□□ 0.19
VPS33A-209ENST00000544349 VCPKMTQ9H867 229 aa16.23■□□□□ 0.19
VPS33A-209ENST00000544349 TUBE1Q9UJT0 475 aa16.23■□□□□ 0.19
VPS33A-209ENST00000544349 VWA3AA6NCI4 1184 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 EPS15P42566 896 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 ZRSR1Q15695 479 aaKnown RBP16.22■□□□□ 0.19
VPS33A-209ENST00000544349 NBPF12Q5TAG4 269 aaPredicted RBP16.22■□□□□ 0.19
VPS33A-209ENST00000544349 NEK8Q86SG6 692 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 APOBEC3FQ8IUX4 373 aaKnown RBP16.22■□□□□ 0.19
VPS33A-209ENST00000544349 TBCKQ8TEA7 893 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 CUL5Q93034 780 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 ARID3AQ99856 593 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 PCDHA1Q9Y5I3 950 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 FOXN1O15353 648 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 POLR2DO15514 142 aaKnown RBP16.22■□□□□ 0.19
VPS33A-209ENST00000544349 YBX3P16989 372 aaKnown RBP eCLIP16.22■□□□□ 0.19
VPS33A-209ENST00000544349 CLK2P49760 499 aaKnown RBP16.22■□□□□ 0.19
VPS33A-209ENST00000544349 MRPL12P52815 198 aaKnown RBP16.22■□□□□ 0.19
VPS33A-209ENST00000544349 IL17AQ16552 155 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 ELOA2Q8IYF1 753 aaPredicted RBP16.22■□□□□ 0.19
VPS33A-209ENST00000544349 CNNM3Q8NE01 707 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 EPSTI1Q96J88 318 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 GLIS2Q9BZE0 524 aaPredicted RBP16.22■□□□□ 0.19
VPS33A-209ENST00000544349 GINM1Q9NU53 330 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 IFNKQ9P0W0 207 aa16.22■□□□□ 0.19
VPS33A-209ENST00000544349 CTNND1O60716 968 aaKnown RBP16.21■□□□□ 0.19
VPS33A-209ENST00000544349 SMC2O95347 1197 aa16.21■□□□□ 0.19
VPS33A-209ENST00000544349 STAT2P52630 851 aa16.21■□□□□ 0.19
VPS33A-209ENST00000544349 HIRAP54198 1017 aaPredicted RBP16.21■□□□□ 0.19
VPS33A-209ENST00000544349 FAM83BQ5T0W9 1011 aa16.21■□□□□ 0.19
VPS33A-209ENST00000544349 CCDC84Q86UT8 332 aaPredicted RBP16.21■□□□□ 0.19
VPS33A-209ENST00000544349 SYMPKQ92797 1274 aaKnown RBP16.21■□□□□ 0.19
VPS33A-209ENST00000544349 AMNQ9BXJ7 453 aa16.21■□□□□ 0.19
VPS33A-209ENST00000544349 PSTPIP2Q9H939 334 aa16.21■□□□□ 0.19
VPS33A-209ENST00000544349 PRR12Q9ULL5 1215 aa16.21■□□□□ 0.19
VPS33A-209ENST00000544349 LAD1O00515 517 aa16.21■□□□□ 0.18
VPS33A-209ENST00000544349 ATP1A3P13637 1013 aa16.21■□□□□ 0.18
VPS33A-209ENST00000544349 SNAP25P60880 206 aa16.21■□□□□ 0.18
VPS33A-209ENST00000544349 LETM2Q2VYF4 491 aa16.21■□□□□ 0.18
VPS33A-209ENST00000544349 GLT8D2Q9H1C3 349 aa16.21■□□□□ 0.18
VPS33A-209ENST00000544349 TMEM60Q9H2L4 133 aa16.21■□□□□ 0.18
VPS33A-209ENST00000544349 RNF181Q9P0P0 153 aa16.21■□□□□ 0.18
VPS33A-209ENST00000544349 CCNT1O60563 726 aaKnown RBP16.2■□□□□ 0.18
VPS33A-209ENST00000544349 DDNO94850 711 aaPredicted RBP16.2■□□□□ 0.18
VPS33A-209ENST00000544349 SKILP12757 684 aa16.2■□□□□ 0.18
VPS33A-209ENST00000544349 LMOD1P29536 600 aaPredicted RBP16.2■□□□□ 0.18
VPS33A-209ENST00000544349 ZYXQ15942 572 aaKnown RBP16.2■□□□□ 0.18
VPS33A-209ENST00000544349 UBE2SQ16763 222 aa16.2■□□□□ 0.18
VPS33A-209ENST00000544349 DCAF15Q66K64 600 aa16.2■□□□□ 0.18
VPS33A-209ENST00000544349 FBXO11Q86XK2 927 aa16.2■□□□□ 0.18
VPS33A-209ENST00000544349 SERTAD1Q9UHV2 236 aa16.2■□□□□ 0.18
VPS33A-209ENST00000544349 PLA2G6O60733 806 aa16.19■□□□□ 0.18
VPS33A-209ENST00000544349 TNNT1P13805 278 aa16.19■□□□□ 0.18
VPS33A-209ENST00000544349 ORC2Q13416 577 aaPredicted RBP16.19■□□□□ 0.18
VPS33A-209ENST00000544349 TPD52L1Q16890 204 aaPredicted RBP16.19■□□□□ 0.18
VPS33A-209ENST00000544349 TMC6Q7Z403 805 aa16.19■□□□□ 0.18
VPS33A-209ENST00000544349 PDILTQ8N807 584 aa16.19■□□□□ 0.18
VPS33A-209ENST00000544349 GGA3Q9NZ52 723 aa16.19■□□□□ 0.18
VPS33A-209ENST00000544349 LONP1P36776 959 aaKnown RBP16.19■□□□□ 0.18
VPS33A-209ENST00000544349 PRPHP41219 470 aa16.19■□□□□ 0.18
VPS33A-209ENST00000544349 MDM2Q00987 491 aaPredicted RBP16.19■□□□□ 0.18
VPS33A-209ENST00000544349 DTHD1Q6ZMT9 781 aa16.19■□□□□ 0.18
VPS33A-209ENST00000544349 CHURC1Q8WUH1 139 aa16.19■□□□□ 0.18
VPS33A-209ENST00000544349 HOOK2Q96ED9 719 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms