RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 SPATA32Q96LK8 384 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 PTCHD1Q96NR3 888 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 KIAA1522Q9P206 1035 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-213ENST00000539950 RAPGEFL1Q9UHV5 662 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 A0A087WZG4 1122 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 A0A1W2PQ27 194 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 A0A1W2PQ64 194 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 A0A1W2PQC6 194 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 A0A1W2PQD8 194 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 TRIM13O60858 407 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 HOXA5P20719 270 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 GJA8P48165 433 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 NCKAP1LP55160 1127 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 TCEAL1Q15170 157 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 PLEKHN1Q494U1 663 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-213ENST00000539950 CYP2R1Q6VVX0 501 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 KLHL6Q8WZ60 621 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 C20orf173Q96LM9 149 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 KCNC2Q96PR1 638 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 MCMBPQ9BTE3 642 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 KLHL25Q9H0H3 589 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 PARD6AQ9NPB6 346 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 WHRNQ9P202 907 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 DIS3Q9Y2L1 958 aaKnown RBP6.08□□□□□ -1.44
VPS13A-213ENST00000539950 PCDHA5Q9Y5H7 936 aa6.08□□□□□ -1.44
VPS13A-213ENST00000539950 UNCXA6NJT0 531 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 EPHX1P07099 455 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 NASPP49321 788 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-213ENST00000539950 SLC7A5Q01650 507 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 POU4F1Q01851 419 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 TMEM62Q0P6H9 643 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 HEATR6Q6AI08 1181 aaKnown RBP6.07□□□□□ -1.44
VPS13A-213ENST00000539950 TMEM151BQ8IW70 566 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 C19orf47Q8N9M1 422 aaKnown RBP6.07□□□□□ -1.44
VPS13A-213ENST00000539950 MARCH10Q8NA82 808 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-213ENST00000539950 SHDQ96IW2 340 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 FGD4Q96M96 766 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 PHAXQ9H814 394 aaKnown RBP6.07□□□□□ -1.44
VPS13A-213ENST00000539950 HCFC2Q9Y5Z7 792 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 SLC12A7Q9Y666 1083 aa6.07□□□□□ -1.44
VPS13A-213ENST00000539950 VAMP4O75379 141 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 DBHP09172 617 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 TACR1P25103 407 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 MAPKAPK2P49137 400 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 AFF3P51826 1226 aaKnown RBP6.06□□□□□ -1.44
VPS13A-213ENST00000539950 ZNF200P98182 395 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-213ENST00000539950 NR1I3Q14994 352 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 VMACQ2NL98 169 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 BICRALQ6AI39 1079 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 CNKSR3Q6P9H4 555 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 FAM129CQ86XR2 697 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 OR6P1Q8NGX9 317 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 ZCCHC4Q9H5U6 513 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 PLA2G2DQ9UNK4 145 aa6.06□□□□□ -1.44
VPS13A-213ENST00000539950 STXBP3O00186 592 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 AURKAO14965 403 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 SRGAP3O43295 1099 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 BUB1BO60566 1050 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-213ENST00000539950 TBC1D8O95759 1140 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 CTSWP56202 376 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 PPP2R5EQ16537 467 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 DPY19L1Q2PZI1 675 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 RCSD1Q6JBY9 416 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 ZC3H14Q6PJT7 736 aaKnown RBP6.05□□□□□ -1.44
VPS13A-213ENST00000539950 PAQR3Q6TCH7 311 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 ADAT2Q7Z6V5 191 aaKnown RBP6.05□□□□□ -1.44
VPS13A-213ENST00000539950 HOMEZQ8IX15 550 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 FAM169BQ8N8A8 192 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 GBP3Q9H0R5 595 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 ACBD3Q9H3P7 528 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 PDLIM7Q9NR12 457 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 SUSD2Q9UGT4 822 aa6.05□□□□□ -1.44
VPS13A-213ENST00000539950 IRS2Q9Y4H2 1338 aa6.04□□□□□ -1.44
VPS13A-213ENST00000539950 A0A0G2JLL6 359 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-213ENST00000539950 A0A1W2PQJ5 194 aa6.04□□□□□ -1.44
VPS13A-213ENST00000539950 CYBBP04839 570 aa6.04□□□□□ -1.44
VPS13A-213ENST00000539950 IGFBP6P24592 240 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-213ENST00000539950 L1CAMP32004 1257 aa6.04□□□□□ -1.44
VPS13A-213ENST00000539950 CORO7P57737 925 aa6.04□□□□□ -1.44
VPS13A-213ENST00000539950 TRIM26Q12899 539 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-213ENST00000539950 NLGN2Q8NFZ4 835 aa6.04□□□□□ -1.44
VPS13A-213ENST00000539950 CGGBP1Q9UFW8 167 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-213ENST00000539950 PPM1BO75688 479 aa6.03□□□□□ -1.44
VPS13A-213ENST00000539950 FBLN1P23142 703 aa6.03□□□□□ -1.44
VPS13A-213ENST00000539950 EEF1DP3Q658K8 133 aa6.03□□□□□ -1.44
VPS13A-213ENST00000539950 ARHGEF39Q8N4T4 335 aa6.03□□□□□ -1.44
VPS13A-213ENST00000539950 ZNF513Q8N8E2 541 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-213ENST00000539950 RGS22Q8NE09 1264 aa6.03□□□□□ -1.44
VPS13A-213ENST00000539950 CPLX3Q8WVH0 158 aa6.03□□□□□ -1.44
VPS13A-213ENST00000539950 PWWP2AQ96N64 755 aa6.03□□□□□ -1.44
VPS13A-213ENST00000539950 FBLN5Q9UBX5 448 aa6.03□□□□□ -1.44
VPS13A-213ENST00000539950 APEX2Q9UBZ4 518 aa6.03□□□□□ -1.44
VPS13A-213ENST00000539950 ZC3H12DA2A288 527 aaKnown RBP6.02□□□□□ -1.45
VPS13A-213ENST00000539950 B8ZZF3 427 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 F8W031 263 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-213ENST00000539950 PPP1R11O60927 126 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-213ENST00000539950 LIMS1P48059 325 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 CASP7P55210 303 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 PRR5P85299 388 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 KIAA1211LQ6NV74 962 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms