RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 USP17L20D6RJB6 530 aa23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 PTPREP23469 700 aa23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 MRPL12P52815 198 aaKnown RBP23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 USP17L24Q0WX57 530 aa23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 MAP1SQ66K74 1059 aaPredicted RBP23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 USP17L6PQ6QN14 398 aa23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 SHC4Q6S5L8 630 aa23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 TBCKQ8TEA7 893 aa23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 SLF1Q9BQI6 1058 aa23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 RRAGCQ9HB90 399 aa23.2■■□□□ 1.3
TNFRSF1A-205ENST00000534885 PTGDRQ13258 359 aa23.19■■□□□ 1.3
TNFRSF1A-205ENST00000534885 SNW1Q13573 536 aaKnown RBP23.19■■□□□ 1.3
TNFRSF1A-205ENST00000534885 CCDC73Q6ZRK6 1079 aa23.19■■□□□ 1.3
TNFRSF1A-205ENST00000534885 PRPF38AQ8NAV1 312 aaKnown RBP23.19■■□□□ 1.3
TNFRSF1A-205ENST00000534885 ENGASEQ8NFI3 743 aa23.19■■□□□ 1.3
TNFRSF1A-205ENST00000534885 PTPRFP10586 1907 aa23.19■■□□□ 1.3
TNFRSF1A-205ENST00000534885 OPLAHO14841 1288 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 CUTAO60888 179 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 FLOT1O75955 427 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 NDUFA8P51970 172 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 TTLL12Q14166 644 aaPredicted RBP23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 CLMNQ96JQ2 1002 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 C12orf42Q96LP6 360 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 C19orf81C9J6K1 198 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 BMP15O95972 392 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 CMA1P23946 247 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 ZNF445P59923 1031 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 ATP2C1P98194 919 aaPredicted RBP23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 FAM160A1Q05DH4 1040 aa23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 FMR1Q06787 632 aaKnown RBP eCLIP23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 SRPRBQ9Y5M8 271 aaKnown RBP23.18■■□□□ 1.3
TNFRSF1A-205ENST00000534885 TRAF5O00463 557 aa23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 MEIS2O14770 477 aa23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 SPECC1Q5M775 1068 aa23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 NEK8Q86SG6 692 aa23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 DDX19AQ9NUU7 478 aaKnown RBP23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 MORC2Q9Y6X9 1032 aaPredicted RBP23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 MYH7BA7E2Y1 1941 aa23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 CAMK4Q16566 473 aa23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 LETM2Q2VYF4 491 aa23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 GAS2L3Q86XJ1 694 aa23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 ELP3Q9H9T3 547 aa23.17■■□□□ 1.3
TNFRSF1A-205ENST00000534885 RLFQ13129 1914 aa23.16■■□□□ 1.3
TNFRSF1A-205ENST00000534885 PFKFB1P16118 471 aa23.16■■□□□ 1.3
TNFRSF1A-205ENST00000534885 RESP18Q5W5W9 173 aa23.16■■□□□ 1.3
TNFRSF1A-205ENST00000534885 ANKRD13AQ8IZ07 590 aa23.16■■□□□ 1.3
TNFRSF1A-205ENST00000534885 FMR1NBQ8N0W7 255 aaPredicted RBP23.16■■□□□ 1.3
TNFRSF1A-205ENST00000534885 GLT8D2Q9H1C3 349 aa23.16■■□□□ 1.3
TNFRSF1A-205ENST00000534885 NUP62CLQ9H1M0 184 aa23.16■■□□□ 1.3
TNFRSF1A-205ENST00000534885 PPP1R9AQ9ULJ8 1098 aa23.16■■□□□ 1.3
TNFRSF1A-205ENST00000534885 ZNF536O15090 1300 aa23.15■■□□□ 1.3
TNFRSF1A-205ENST00000534885 MAP3K11Q16584 847 aa23.15■■□□□ 1.3
TNFRSF1A-205ENST00000534885 LDHDQ86WU2 507 aa23.15■■□□□ 1.3
TNFRSF1A-205ENST00000534885 C4orf32Q8N8J7 132 aa23.15■■□□□ 1.3
TNFRSF1A-205ENST00000534885 P2RX7Q99572 595 aaKnown RBP23.15■■□□□ 1.3
TNFRSF1A-205ENST00000534885 EDIL3O43854 480 aa23.15■■□□□ 1.3
TNFRSF1A-205ENST00000534885 CCNT1O60563 726 aaKnown RBP23.15■■□□□ 1.3
TNFRSF1A-205ENST00000534885 CSRNP2Q9H175 543 aa23.15■■□□□ 1.3
TNFRSF1A-205ENST00000534885 OTUD5Q96G74 571 aa23.14■■□□□ 1.29
TNFRSF1A-205ENST00000534885 AGBL1Q96MI9 1066 aa23.14■■□□□ 1.29
TNFRSF1A-205ENST00000534885 TMEM60Q9H2L4 133 aa23.14■■□□□ 1.29
TNFRSF1A-205ENST00000534885 CLSTN2Q9H4D0 955 aa23.14■■□□□ 1.29
TNFRSF1A-205ENST00000534885 TMOD4Q9NZQ9 345 aa23.14■■□□□ 1.29
TNFRSF1A-205ENST00000534885 TRAF1Q13077 416 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 SH3D19Q5HYK7 790 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 RBM46Q8TBY0 533 aaKnown RBP23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 WNK4Q96J92 1243 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 SLC38A10Q9HBR0 1119 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 HPSEQ9Y251 543 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 ICAM1P05362 532 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 HOXA13P31271 388 aaPredicted RBP23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 IL17AQ16552 155 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 ZNF579Q8NAF0 562 aaKnown RBP23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 FERMT2Q96AC1 680 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 ATG4CQ96DT6 458 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 ZNF408Q9H9D4 720 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 NMRK2Q9NPI5 230 aa23.13■■□□□ 1.29
TNFRSF1A-205ENST00000534885 VWA3AA6NCI4 1184 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 IRF6O14896 467 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 KINO60870 393 aaKnown RBP23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 USP49Q70CQ1 688 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 ARMC9Q7Z3E5 817 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 ERO1BQ86YB8 467 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 CPXCR1Q8N123 301 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 TBC1D5Q92609 795 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 ANO3Q9BYT9 981 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 TNMDQ9H2S6 317 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 CCPG1Q9ULG6 757 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 COL11A1P12107 1806 aaPredicted RBP23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 FAM237AA0A1B0GTK4 181 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 LRSAM1Q6UWE0 723 aa23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 ZNF526Q8TF50 670 aaPredicted RBP23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 RAVER2Q9HCJ3 691 aaKnown RBP23.12■■□□□ 1.29
TNFRSF1A-205ENST00000534885 SPDYE5A6NIY4 337 aa23.11■■□□□ 1.29
TNFRSF1A-205ENST00000534885 ZNF202O95125 648 aa23.11■■□□□ 1.29
TNFRSF1A-205ENST00000534885 TDP2O95551 362 aa23.11■■□□□ 1.29
TNFRSF1A-205ENST00000534885 PPATQ06203 517 aa23.11■■□□□ 1.29
TNFRSF1A-205ENST00000534885 AP3B2Q13367 1082 aa23.11■■□□□ 1.29
TNFRSF1A-205ENST00000534885 VWA5AO00534 786 aa23.1■■□□□ 1.29
TNFRSF1A-205ENST00000534885 CFBP00751 764 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms