RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 TP53INP2Q8IXH6 220 aa4.9□□□□□ -1.62
CSMD3-210ENST00000534172 ADCY4Q8NFM4 1077 aa4.9□□□□□ -1.62
CSMD3-210ENST00000534172 KCTD13Q8WZ19 329 aa4.9□□□□□ -1.62
CSMD3-210ENST00000534172 FCRL2Q96LA5 508 aaPredicted RBP4.9□□□□□ -1.62
CSMD3-210ENST00000534172 ALPK1Q96QP1 1244 aa4.9□□□□□ -1.62
CSMD3-210ENST00000534172 SLC12A9Q9BXP2 914 aa4.9□□□□□ -1.62
CSMD3-210ENST00000534172 ZNF281Q9Y2X9 895 aa4.9□□□□□ -1.62
CSMD3-210ENST00000534172 BACE2Q9Y5Z0 518 aa4.9□□□□□ -1.62
CSMD3-210ENST00000534172 H0Y8X5 98 aa4.9□□□□□ -1.63
CSMD3-210ENST00000534172 MED26O95402 600 aa4.9□□□□□ -1.63
CSMD3-210ENST00000534172 NAT1P18440 290 aa4.9□□□□□ -1.63
CSMD3-210ENST00000534172 TMEM67Q5HYA8 995 aa4.9□□□□□ -1.63
CSMD3-210ENST00000534172 CDC6Q99741 560 aa4.9□□□□□ -1.63
CSMD3-210ENST00000534172 FOXP3Q9BZS1 431 aa4.9□□□□□ -1.63
CSMD3-210ENST00000534172 APEX2Q9UBZ4 518 aa4.9□□□□□ -1.63
CSMD3-210ENST00000534172 KIF13AQ9H1H9 1805 aa4.9□□□□□ -1.63
CSMD3-210ENST00000534172 FAM221BA6H8Z2 402 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 MEIS1O00470 390 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 CD3EP07766 207 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 GSTM1P09488 218 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 RAC2P15153 192 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 CTSKP43235 329 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 SEPHS1P49903 392 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 SUMO1P63165 101 aaKnown RBP4.89□□□□□ -1.63
CSMD3-210ENST00000534172 ACBD5Q5T8D3 534 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-210ENST00000534172 WAPLQ7Z5K2 1190 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 LILRA2Q8N149 483 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 PAK6Q9NQU5 681 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-210ENST00000534172 FITM1A5D6W6 292 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 C2orf71A6NGG8 1288 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 MARCH6O60337 910 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 GDNFP39905 211 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 PPP2R2AP63151 447 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 PLCL1Q15111 1095 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 RNF187Q5TA31 235 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-210ENST00000534172 CRTC3Q6UUV7 619 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 HOMER1Q86YM7 354 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 NAT16Q8N8M0 369 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 TMEM59LQ9UK28 342 aa4.89□□□□□ -1.63
CSMD3-210ENST00000534172 BIN1O00499 593 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 SNRPB2P08579 225 aaKnown RBP4.88□□□□□ -1.63
CSMD3-210ENST00000534172 PAMP19021 973 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 IBSPP21815 317 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-210ENST00000534172 RPL10P27635 214 aaKnown RBP4.88□□□□□ -1.63
CSMD3-210ENST00000534172 TESK1Q15569 626 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 RSPO2Q6UXX9 243 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-210ENST00000534172 SPRED2Q7Z698 418 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 PDZD8Q8NEN9 1154 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 MMP19Q99542 508 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 CDADC1Q9BWV3 514 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 KDM6BO15054 1643 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 PDS5BQ9NTI5 1447 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 A0A1W2PQ45 241 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-210ENST00000534172 A0A1W2PQY0 241 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 WTIPA6NIX2 430 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-210ENST00000534172 FGF10O15520 208 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-210ENST00000534172 CAPNS1P04632 268 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 AFMP43652 599 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 KCNJ6P48051 423 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 KCNAB2Q13303 367 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 SNX17Q15036 470 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 NSMFQ6X4W1 530 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 PTCHD1Q96NR3 888 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 FCRL3Q96P31 734 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-210ENST00000534172 ZFYVE21Q9BQ24 234 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 SLAMF8Q9P0V8 285 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 PFDN2Q9UHV9 154 aa4.88□□□□□ -1.63
CSMD3-210ENST00000534172 NOP58Q9Y2X3 529 aaKnown RBP4.88□□□□□ -1.63
CSMD3-210ENST00000534172 TRBV23-1A0A0A0MS06 115 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 PABPC1P11940 636 aaKnown RBP4.87□□□□□ -1.63
CSMD3-210ENST00000534172 NR0B2Q15466 257 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 GALNT18Q6P9A2 607 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 SPATC1Q76KD6 591 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 FILIP1Q7Z7B0 1213 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 NBPF11Q86T75 865 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 BTN2A2Q8WVV5 523 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 APPBP2Q92624 585 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 MAP6Q96JE9 813 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 DHRS4Q9BTZ2 278 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 BRINP2Q9C0B6 783 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 IFT57Q9NWB7 429 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 HMGXB3Q12766 1538 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 MEFVO15553 781 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-210ENST00000534172 PRODHO43272 600 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 VAMP4O75379 141 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 GTF2A2P52657 109 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 GFRA1P56159 465 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 CORO7P57737 925 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 ANAPC15P60006 121 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 PLEKHG4Q58EX7 1191 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 RTP2Q5QGT7 225 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 ZCRB1Q8TBF4 217 aaKnown RBP4.87□□□□□ -1.63
CSMD3-210ENST00000534172 COPS5Q92905 334 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 ARHGEF4Q9NR80 690 aa4.87□□□□□ -1.63
CSMD3-210ENST00000534172 GPR55Q9Y2T6 319 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-210ENST00000534172 EFCAB14O75071 495 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 GP2P55259 537 aaKnown RBP4.86□□□□□ -1.63
CSMD3-210ENST00000534172 SLC14A2Q15849 920 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 DPY19L1Q2PZI1 675 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 DCAF4Q8WV16 495 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms