RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, human

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP4A-208	ENST00000534106	ECEL1	O95672	775 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NEFL	P07196	543 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	EN2	P19622	333 aa	Predicted RBP	4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ZNF157	P51786	506 aa	Predicted RBP	4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ST5	P78524	1137 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	HNRNPU	Q00839	825 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NOG	Q13253	232 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	HLF	Q16534	295 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	AOC3	Q16853	763 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	AMOT	Q4VCS5	1084 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SOGA3	Q5TF21	947 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	RGMB	Q6NW40	437 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CCNJL	Q8IV13	435 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	KSR1	Q8IVT5	923 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	HOMEZ	Q8IX15	550 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	PI4K2B	Q8TCG2	481 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ZNF296	Q8WUU4	475 aa	Predicted RBP	4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	MISP3	Q96FF7	219 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ZNF496	Q96IT1	587 aa	Predicted RBP	4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SLC38A3	Q99624	504 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ZC3H12C	Q9C0D7	883 aa	Known RBP	4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	RC3H2	Q9HBD1	1191 aa	Known RBP	4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	C1GALT1	Q9NS00	363 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	GPRC5D	Q9NZD1	345 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	PGAP2	Q9UHJ9	254 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SCAF8	Q9UPN6	1271 aa	Known RBP	4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	USP16	Q9Y5T5	823 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	LTBP1	Q14766	1721 aa		4.07	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CENPF	P49454	3210 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ASTN2	O75129	1339 aa	Predicted RBP	4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	DYNC1LI2	O43237	492 aa	Predicted RBP	4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	RNGTT	O60942	597 aa	Known RBP	4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	PAPLN	O95428	1278 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	STARD3NL	O95772	234 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SLFN14	P0C7P3	912 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	FAM87A	P0C7U9	286 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	LIG1	P18858	919 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	MTHFSD	Q2M296	383 aa	Known RBP	4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	MOB2	Q70IA6	237 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CDC37L1	Q7L3B6	337 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	GALNT12	Q8IXK2	581 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NETO1	Q8TDF5	533 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	FAM168A	Q92567	244 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	GCC1	Q96CN9	775 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	HHIPL1	Q96JK4	782 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	PSMD1	Q99460	953 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	KRTAP4-7	Q9BYR0	210 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NRSN2	Q9GZP1	204 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SSU72	Q9NP77	194 aa	Known RBP	4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	KCNQ5	Q9NR82	932 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ADARB2	Q9NS39	739 aa	Known RBP	4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	BRPF3	Q9ULD4	1205 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	HTT	P42858	3142 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SLX4	Q8IY92	1834 aa		4.06	□□□□□ -1.76
CHMP4A-208	ENST00000534106	TRIOBP	Q9H2D6	2365 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	KIF24	Q5T7B8	1368 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	TIAM2	Q8IVF5	1701 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	DBX1	A6NMT0	343 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106		H0YGN5	161 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	PPIP5K2	O43314	1243 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	HMOX1	P09601	288 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CD8B	P10966	210 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NPR3	P17342	541 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ALDH1B1	P30837	517 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	IL13	P35225	146 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	IL6ST	P40189	918 aa	Predicted RBP	4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CDK5R2	Q13319	367 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ZNF211	Q13398	564 aa	Predicted RBP	4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	PRAMEF18	Q5VWM3	479 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	TPTE2	Q6XPS3	522 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SPRED2	Q7Z698	418 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NIM1K	Q8IY84	436 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	GJD3	Q8N144	294 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	PLD6	Q8N2A8	252 aa	Known RBP	4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NGEF	Q8N5V2	710 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ZNF428	Q96B54	188 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	TCF12	Q99081	682 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	POLR3GL	Q9BT43	218 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	WDR18	Q9BV38	432 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	GBA2	Q9HCG7	927 aa	Predicted RBP	4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SAGE1	Q9NXZ1	904 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CNOT7	Q9UIV1	285 aa	Known RBP	4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	HDAC9	Q9UKV0	1011 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	PPP1R9A	Q9ULJ8	1098 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NIP7	Q9Y221	180 aa	Known RBP eCLIP	4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ADAMTS7	Q9UKP4	1686 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CCDC88A	Q3V6T2	1871 aa		4.05	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NPC1L1	Q9UHC9	1359 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	YDJC	A8MPS7	323 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	UBE2Q2L	H0YL09	131 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	GADD45B	O75293	160 aa	Predicted RBP	4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	B3GALT4	O96024	378 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	AP3B2	Q13367	1082 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SEZ6L2	Q6UXD5	910 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	KRT26	Q7Z3Y9	468 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ATG4D	Q86TL0	474 aa	Predicted RBP	4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	C2orf69	Q8N8R5	385 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	FAM181A	Q8N9Y4	354 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	IL17RE	Q8NFR9	667 aa		4.04	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms