RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 RNF180Q86T96 592 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 LRRTM3Q86VH5 581 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 SPACA3Q8IXA5 215 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 RPUSD2Q8IZ73 545 aaKnown RBP6.45□□□□□ -1.38
CD44-220ENST00000525688 USHBP1Q8N6Y0 703 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 NPLOC4Q8TAT6 608 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 FRS2Q8WU20 508 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 DCAF4Q8WV16 495 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 FCRL3Q96P31 734 aaPredicted RBP6.45□□□□□ -1.38
CD44-220ENST00000525688 SLC12A9Q9BXP2 914 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 ATG3Q9NT62 314 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 NPFFR2Q9Y5X5 522 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 MROH2BQ7Z745 1585 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 FAM83GA6ND36 823 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 C2orf71A6NGG8 1288 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 WDR64B1ANS9 1081 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 MEIS1O00470 390 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 DNAJC8O75937 253 aaPredicted RBP6.44□□□□□ -1.38
CD44-220ENST00000525688 ZNF205O95201 554 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 CEACAM5P06731 702 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 CD3EP07766 207 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 POU3F3P20264 500 aaPredicted RBP6.44□□□□□ -1.38
CD44-220ENST00000525688 SOX5P35711 763 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 ECI1P42126 302 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 PRSS53Q2L4Q9 553 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 EEF1DP3Q658K8 133 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 BRAPQ7Z569 592 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 SHKBP1Q8TBC3 707 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 DDX1Q92499 740 aaKnown RBP6.44□□□□□ -1.38
CD44-220ENST00000525688 OSBPL1AQ9BXW6 950 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 NDOR1Q9UHB4 597 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 PLAGL2Q9UPG8 496 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 SNX11Q9Y5W9 270 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 SMARCA2P51531 1590 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 PEG3Q9GZU2 1588 aa6.44□□□□□ -1.38
CD44-220ENST00000525688 BLACEA4D250 179 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 STXBP3O00186 592 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 ASLP04424 464 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 THBDP07204 575 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 IFNGR1P15260 489 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 NAT1P18440 290 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 FSTP19883 344 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 ENDOUP21128 410 aaKnown RBP6.43□□□□□ -1.38
CD44-220ENST00000525688 PLA2G4EQ3MJ16 856 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 E4F1Q66K89 784 aaPredicted RBP6.43□□□□□ -1.38
CD44-220ENST00000525688 ARHGAP27Q6ZUM4 889 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 FAM181AQ8N9Y4 354 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 SCLYQ96I15 445 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 HSPA12BQ96MM6 686 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 ZFYVE21Q9BQ24 234 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 TARS2Q9BW92 718 aaKnown RBP6.43□□□□□ -1.38
CD44-220ENST00000525688 SEMA3GQ9NS98 782 aa6.43□□□□□ -1.38
CD44-220ENST00000525688 HMGXB3Q12766 1538 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 ARNTLO00327 626 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 AQP7O14520 342 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 NPTXRO95502 500 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 TPP2P29144 1249 aaPredicted RBP6.42□□□□□ -1.38
CD44-220ENST00000525688 PCBP3P57721 371 aaKnown RBP6.42□□□□□ -1.38
CD44-220ENST00000525688 IFI16Q16666 785 aaKnown RBP6.42□□□□□ -1.38
CD44-220ENST00000525688 RTP2Q5QGT7 225 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 CDKAL1Q5VV42 579 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 USP53Q70EK8 1073 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 TMPRSS7Q7RTY8 843 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 FGD2Q7Z6J4 655 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 PPIL6Q8IXY8 311 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 AHI1Q8N157 1196 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 PPM1KQ8N3J5 372 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 MAGEB10Q96LZ2 347 aaPredicted RBP6.42□□□□□ -1.38
CD44-220ENST00000525688 GPRC5CQ9NQ84 441 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 GPR27Q9NS67 375 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 TYW1Q9NV66 732 aaKnown RBP6.42□□□□□ -1.38
CD44-220ENST00000525688 ATP8A1Q9Y2Q0 1164 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 ASXL2Q76L83 1435 aa6.42□□□□□ -1.38
CD44-220ENST00000525688 TMEM265A0A087WTH1 108 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 TCRBV16S1A1N1A0A5B0 115 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 H3BS24 57 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 RAB11FIP3O75154 756 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 IGFALSP35858 605 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 SEPHS1P49903 392 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 IQCEQ6IPM2 695 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 TMED8Q6PL24 325 aaPredicted RBP6.41□□□□□ -1.38
CD44-220ENST00000525688 RNF111Q6ZNA4 994 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 NETO1Q8TDF5 533 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 UBE2FQ969M7 185 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 MMP19Q99542 508 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 ZSWIM5Q9P217 1185 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 TCFL5Q9UL49 500 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 ZNF281Q9Y2X9 895 aa6.41□□□□□ -1.38
CD44-220ENST00000525688 TNPO3Q9Y5L0 923 aaKnown RBP6.41□□□□□ -1.38
CD44-220ENST00000525688 TRBV23OR9-2A0A075B6M9 112 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 PRR19A6NJB7 356 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 WASH4PA8MWX3 477 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 B4E1Z4 1266 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 FGF10O15520 208 aaPredicted RBP6.4□□□□□ -1.38
CD44-220ENST00000525688 MEFVO15553 781 aaPredicted RBP6.4□□□□□ -1.38
CD44-220ENST00000525688 CYP26A1O43174 497 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 GDF11O95390 407 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 CRTAMO95727 393 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 SYPP08247 313 aa6.4□□□□□ -1.38
CD44-220ENST00000525688 GSTM1P09488 218 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms