RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 USP26Q9BXU7 913 aa8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 GLIS2Q9BZE0 524 aaPredicted RBP8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 PODXL2Q9NZ53 605 aa8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 A0A096LPE4 126 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 A0A1W2PPZ6 126 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 PSMD14O00487 310 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 APAF1O14727 1248 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 GADD45BO75293 160 aaPredicted RBP8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 CELF2O95319 508 aaKnown RBP8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 ESRRAP11474 423 aaPredicted RBP8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 GPSM2P81274 684 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 ZMYM1Q5SVZ6 1142 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 PRR23CQ6ZRP0 262 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 CDC37L1Q7L3B6 337 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 TMC7Q7Z402 723 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 TBC1D16Q8TBP0 767 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 CCDC74AQ96AQ1 378 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 TCF12Q99081 682 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 PHAXQ9H814 394 aaKnown RBP8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 KCNQ5Q9NR82 932 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 IFT57Q9NWB7 429 aa8.22□□□□□ -1.09
PRPF40A-210ENST00000489741 H7C1D1 291 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 AOC2O75106 756 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 IGHA2P01877 340 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 PCCAP05165 728 aaPredicted RBP8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 VIL1P09327 827 aaKnown RBP8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 RPS12P25398 132 aaKnown RBP8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 GRIA4P48058 902 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 GNAI1P63096 354 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 GSTM4Q03013 218 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 SPRED3Q2MJR0 410 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 KIAA0319Q5VV43 1072 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 C8orf58Q8NAV2 365 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 CCDC191Q8NCU4 936 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 UTP4Q969X6 686 aaKnown RBP8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 ALKBH8Q96BT7 664 aaKnown RBP8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 CSRNP1Q96S65 589 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 UBL7Q96S82 380 aaPredicted RBP8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 RUSC1Q9BVN2 902 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 BCL2L13Q9BXK5 485 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 RNF208Q9H0X6 261 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 SOX17Q9H6I2 414 aaPredicted RBP8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 DBNDD1Q9H9R9 158 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 DUOX1Q9NRD9 1551 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 RTL9Q8NET4 1388 aa8.21□□□□□ -1.1
PRPF40A-210ENST00000489741 SART1O43290 800 aaKnown RBP8.2□□□□□ -1.1
PRPF40A-210ENST00000489741 PCDH1Q08174 1060 aa8.2□□□□□ -1.1
PRPF40A-210ENST00000489741 FDX2Q6P4F2 183 aa8.2□□□□□ -1.1
PRPF40A-210ENST00000489741 DLK2Q6UY11 383 aa8.2□□□□□ -1.1
PRPF40A-210ENST00000489741 USP48Q86UV5 1035 aa8.2□□□□□ -1.1
PRPF40A-210ENST00000489741 TRAIPQ9BWF2 469 aa8.2□□□□□ -1.1
PRPF40A-210ENST00000489741 CLEC4MQ9H2X3 399 aaPredicted RBP8.2□□□□□ -1.1
PRPF40A-210ENST00000489741 COL4A1P02462 1669 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 ELL2O00472 640 aaPredicted RBP8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 DHX15O43143 795 aaKnown RBP8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 CA12O43570 354 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 ECE2O60344 883 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 PDE8AO60658 829 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 HSP90B1P14625 803 aaKnown RBP8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 ZNF280AP59817 542 aaPredicted RBP8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 CALD1Q05682 793 aaKnown RBP8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 ANKRD34AQ69YU3 496 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 TSPYL6Q8N831 410 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 ABHD8Q96I13 439 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 GMLQ99445 158 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 EYA3Q99504 573 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 MYD88Q99836 296 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 METTL22Q9BUU2 404 aaPredicted RBP8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 ZC3H12CQ9C0D7 883 aaKnown RBP8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 ANKRD36CQ5JPF3 1778 aa8.19□□□□□ -1.1
PRPF40A-210ENST00000489741 SCO2A0A1W2PP80 73 aa8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 EIF4EBP3O60516 100 aaPredicted RBP8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 IGKV5-2P06315 115 aa8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 RGS19P49795 217 aa8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 UVSSAQ2YD98 709 aa8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 CCDC152Q4G0S7 254 aa8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 TBC1D10BQ4KMP7 808 aaPredicted RBP8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 CCDC30Q5VVM6 783 aa8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 KRT26Q7Z3Y9 468 aa8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 EPS8L3Q8TE67 593 aaKnown RBP8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 JARID2Q92833 1246 aaPredicted RBP8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 CHMP4AQ9BY43 222 aa8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 CWC25Q9NXE8 425 aaPredicted RBP8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 THSD7BQ9C0I4 1608 aa8.18□□□□□ -1.1
PRPF40A-210ENST00000489741 LOC100289279A0A1B0GTE1 492 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 WTIPA6NIX2 430 aaPredicted RBP8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 FAM155AB1AL88 458 aaPredicted RBP8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 PATL2C9JE40 543 aaKnown RBP8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 HUNKP57058 714 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 NOGQ13253 232 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 CCDC27Q2M243 656 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 CCDC184Q52MB2 194 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 KSR2Q6VAB6 950 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 AGBL3Q8NEM8 1001 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 TTLL11Q8NHH1 800 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 FAM46AQ96IP4 442 aaKnown RBP8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 RAXQ9Y2V3 346 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 ZNF609O15014 1411 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 LRRC37AA6NMS7 1700 aa8.17□□□□□ -1.1
PRPF40A-210ENST00000489741 LAMB2P55268 1798 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms