RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 ADALQ6DHV7 355 aa24.71■■□□□ 1.55
SMC4-221ENST00000489573 ICAM1P05362 532 aa24.71■■□□□ 1.55
SMC4-221ENST00000489573 TAL1P17542 331 aaPredicted RBP24.71■■□□□ 1.55
SMC4-221ENST00000489573 FKBP1BP68106 108 aa24.71■■□□□ 1.55
SMC4-221ENST00000489573 PPIL2Q13356 520 aa24.71■■□□□ 1.55
SMC4-221ENST00000489573 ZNF174Q15697 407 aa24.71■■□□□ 1.55
SMC4-221ENST00000489573 SLC38A10Q9HBR0 1119 aa24.71■■□□□ 1.55
SMC4-221ENST00000489573 ABCB11O95342 1321 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 A0A1W2PQ27 194 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 A0A1W2PQ64 194 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 A0A1W2PQD8 194 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 USP17L15C9J2P7 530 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 USP17L13C9JLJ4 530 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 USP17L11C9JVI0 530 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 USP17L18D6R9N7 530 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 USP17L22D6RA61 530 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 USP17L17D6RBQ6 530 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 USP17L19D6RCP7 530 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 USP17L20D6RJB6 530 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 CXCL11O14625 94 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 IRF6O14896 467 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 USP17L24Q0WX57 530 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 TEX2Q8IWB9 1127 aa24.7■■□□□ 1.54
SMC4-221ENST00000489573 SYAP1Q96A49 352 aaPredicted RBP24.7■■□□□ 1.54
SMC4-221ENST00000489573 GZF1Q9H116 711 aaPredicted RBP24.7■■□□□ 1.54
SMC4-221ENST00000489573 MRPL11Q9Y3B7 192 aaKnown RBP24.7■■□□□ 1.54
SMC4-221ENST00000489573 ZNF536O15090 1300 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 A0A0G2JLL6 359 aaPredicted RBP24.69■■□□□ 1.54
SMC4-221ENST00000489573 ZBED4O75132 1171 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 AXDND1Q5T1B0 1012 aaPredicted RBP24.69■■□□□ 1.54
SMC4-221ENST00000489573 MCTP2Q6DN12 878 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 CATSPERGQ6ZRH7 1159 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 PRRT2Q7Z6L0 340 aaPredicted RBP24.69■■□□□ 1.54
SMC4-221ENST00000489573 NEK8Q86SG6 692 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 TBCKQ8TEA7 893 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 OPTNQ96CV9 577 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 CCPG1Q9ULG6 757 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 KCNH4Q9UQ05 1017 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 CTDP1Q9Y5B0 961 aaPredicted RBP24.69■■□□□ 1.54
SMC4-221ENST00000489573 PTPRFP10586 1907 aa24.69■■□□□ 1.54
SMC4-221ENST00000489573 CCAR1Q8IX12 1150 aaKnown RBP24.68■■□□□ 1.54
SMC4-221ENST00000489573 KRI1Q8N9T8 703 aaKnown RBP24.68■■□□□ 1.54
SMC4-221ENST00000489573 ATG4CQ96DT6 458 aa24.68■■□□□ 1.54
SMC4-221ENST00000489573 GPBP1L1Q9HC44 474 aaPredicted RBP24.68■■□□□ 1.54
SMC4-221ENST00000489573 GBA2Q9HCG7 927 aaPredicted RBP24.68■■□□□ 1.54
SMC4-221ENST00000489573 TMEM63CQ9P1W3 806 aa24.68■■□□□ 1.54
SMC4-221ENST00000489573 PNMA2Q9UL42 364 aa24.68■■□□□ 1.54
SMC4-221ENST00000489573 PARP14Q460N5 1801 aa24.68■■□□□ 1.54
SMC4-221ENST00000489573 MEIS2O14770 477 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 OPLAHO14841 1288 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 CUTAO60888 179 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 LIG1P18858 919 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 DSG3P32926 999 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 MCM7P33993 719 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 AP3B2Q13367 1082 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 COG2Q14746 738 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 USP17L6PQ6QN14 398 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 PROCA1Q8NCQ7 364 aaPredicted RBP24.67■■□□□ 1.54
SMC4-221ENST00000489573 MRPS27Q92552 414 aaKnown RBP24.67■■□□□ 1.54
SMC4-221ENST00000489573 FBXO2Q9UK22 296 aaPredicted RBP24.67■■□□□ 1.54
SMC4-221ENST00000489573 LOC285556D6RIA3 1793 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 MYPNQ86TC9 1320 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 VWA5AO00534 786 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 PTPREP23469 700 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 ATP2C1P98194 919 aaPredicted RBP24.67■■□□□ 1.54
SMC4-221ENST00000489573 CHADLQ6NUI6 762 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 FSIP1Q8NA03 581 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 SLC10A4Q96EP9 437 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 AGBL1Q96MI9 1066 aa24.67■■□□□ 1.54
SMC4-221ENST00000489573 PIK3CDO00329 1044 aa24.66■■□□□ 1.54
SMC4-221ENST00000489573 CELF2O95319 508 aaKnown RBP24.66■■□□□ 1.54
SMC4-221ENST00000489573 LETM2Q2VYF4 491 aa24.66■■□□□ 1.54
SMC4-221ENST00000489573 GADL1Q6ZQY3 521 aa24.66■■□□□ 1.54
SMC4-221ENST00000489573 CCDC73Q6ZRK6 1079 aa24.66■■□□□ 1.54
SMC4-221ENST00000489573 RAVER2Q9HCJ3 691 aaKnown RBP24.66■■□□□ 1.54
SMC4-221ENST00000489573 SRPRBQ9Y5M8 271 aaKnown RBP24.66■■□□□ 1.54
SMC4-221ENST00000489573 PTGDRQ13258 359 aa24.65■■□□□ 1.54
SMC4-221ENST00000489573 ORC2Q13416 577 aaPredicted RBP24.65■■□□□ 1.54
SMC4-221ENST00000489573 TREML2Q5T2D2 321 aa24.65■■□□□ 1.54
SMC4-221ENST00000489573 CPXCR1Q8N123 301 aa24.65■■□□□ 1.54
SMC4-221ENST00000489573 C2orf69Q8N8R5 385 aa24.65■■□□□ 1.54
SMC4-221ENST00000489573 ANO3Q9BYT9 981 aa24.65■■□□□ 1.54
SMC4-221ENST00000489573 GOLPH3LQ9H4A5 285 aa24.65■■□□□ 1.54
SMC4-221ENST00000489573 ADAMTS5Q9UNA0 930 aa24.65■■□□□ 1.54
SMC4-221ENST00000489573 RLFQ13129 1914 aa24.64■■□□□ 1.54
SMC4-221ENST00000489573 FOSP01100 380 aaPredicted RBP24.64■■□□□ 1.54
SMC4-221ENST00000489573 CMA1P23946 247 aa24.64■■□□□ 1.54
SMC4-221ENST00000489573 CCDC183Q5T5S1 534 aa24.64■■□□□ 1.54
SMC4-221ENST00000489573 FERMT2Q96AC1 680 aa24.64■■□□□ 1.54
SMC4-221ENST00000489573 CLIC6Q96NY7 704 aa24.64■■□□□ 1.54
SMC4-221ENST00000489573 HOXC10Q9NYD6 342 aa24.64■■□□□ 1.54
SMC4-221ENST00000489573 MRVI1Q9Y6F6 885 aa24.64■■□□□ 1.54
SMC4-221ENST00000489573 CCNT1O60563 726 aaKnown RBP24.63■■□□□ 1.53
SMC4-221ENST00000489573 REPS2Q8NFH8 660 aa24.63■■□□□ 1.53
SMC4-221ENST00000489573 WNK4Q96J92 1243 aa24.63■■□□□ 1.53
SMC4-221ENST00000489573 DACT1Q9NYF0 836 aa24.63■■□□□ 1.53
SMC4-221ENST00000489573 SPDYE3A6NKU9 549 aa24.63■■□□□ 1.53
SMC4-221ENST00000489573 SPDYE16A6NNV3 312 aaPredicted RBP24.63■■□□□ 1.53
SMC4-221ENST00000489573 GCOM1H8Y6P7 765 aaPredicted RBP24.63■■□□□ 1.53
SMC4-221ENST00000489573 POLR2MP0CAP2 368 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms