RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ANKRD40Q6AI12 368 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 HPS3Q969F9 1004 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 TUBGCP2Q9BSJ2 902 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 UBA5Q9GZZ9 404 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 AGPAT5Q9NUQ2 364 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 BIN2Q9UBW5 565 aaPredicted RBP20.13■□□□□ 0.81
VIM-206ENST00000487938 CAPN11Q9UMQ6 739 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 MYL1P05976 194 aa20.12■□□□□ 0.81
VIM-206ENST00000487938 GPSM2P81274 684 aa20.12■□□□□ 0.81
VIM-206ENST00000487938 TSR1Q2NL82 804 aaKnown RBP20.12■□□□□ 0.81
VIM-206ENST00000487938 NCAPH2Q6IBW4 605 aa20.12■□□□□ 0.81
VIM-206ENST00000487938 TEX11Q8IYF3 940 aa20.12■□□□□ 0.81
VIM-206ENST00000487938 PIGSQ96S52 555 aa20.12■□□□□ 0.81
VIM-206ENST00000487938 LZTS2Q9BRK4 669 aa20.12■□□□□ 0.81
VIM-206ENST00000487938 TNRC6CQ9HCJ0 1690 aaKnown RBP20.11■□□□□ 0.81
VIM-206ENST00000487938 A0A1W2PQC6 194 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 ASIC1P78348 528 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 TUBB2AQ13885 445 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 DNAJC7Q99615 494 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 TUBB2BQ9BVA1 445 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 TRIM9Q9C026 710 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 C6orf50Q9HD87 102 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 MYO6Q9UM54 1294 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 ENC1O14682 589 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 KRT25Q7Z3Z0 450 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 TBCKQ8TEA7 893 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 RRP36Q96EU6 259 aaKnown RBP20.11■□□□□ 0.81
VIM-206ENST00000487938 DHTKD1Q96HY7 919 aaPredicted RBP20.11■□□□□ 0.81
VIM-206ENST00000487938 SPZ1Q9BXG8 430 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 CD209Q9NNX6 404 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 EXOC1Q9NV70 894 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 TMEM260Q9NX78 707 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 MYO1AQ9UBC5 1043 aa20.11■□□□□ 0.81
VIM-206ENST00000487938 CTAGE15A4D2H0 777 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 RASSF10A6NK89 507 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 NKRFO15226 690 aaKnown RBP eCLIP20.1■□□□□ 0.81
VIM-206ENST00000487938 CTAGE8P0CG41 777 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 CYP2C19P33261 490 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 DNM2P50570 870 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 HERVK_113P62684 666 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 COL24A1Q17RW2 1714 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 C16orf86Q6ZW13 317 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 CTAGE6Q86UF2 777 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 CTAGE4Q8IX94 777 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 P2RX5Q93086 422 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 CEP95Q96GE4 821 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 ZNF287Q9HBT7 754 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 HDAC6Q9UBN7 1215 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 BTAF1O14981 1849 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 USP17L5A8MUK1 530 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 SRGNP10124 158 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 NT5C2P49902 561 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 GYS2P54840 703 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 ST5P78524 1137 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 TBC1D8BQ0IIM8 1120 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 BEND6Q5SZJ8 279 aaPredicted RBP20.1■□□□□ 0.81
VIM-206ENST00000487938 TRAPPC3LQ5T215 181 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 SOGA3Q5TF21 947 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 NEK8Q86SG6 692 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 CNBD1Q8NA66 436 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 MSANTD4Q8NCY6 345 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 NEDD1Q8NHV4 660 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 AK8Q96MA6 479 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 PCMTD1Q96MG8 357 aaPredicted RBP20.1■□□□□ 0.81
VIM-206ENST00000487938 SUGCTQ9HAC7 445 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 ABCB6Q9NP58 842 aa20.1■□□□□ 0.81
VIM-206ENST00000487938 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.1■□□□□ 0.81
VIM-206ENST00000487938 SBF2Q86WG5 1849 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 UFL1O94874 794 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 TRIM21P19474 475 aaKnown RBP20.09■□□□□ 0.81
VIM-206ENST00000487938 CCNE1P24864 410 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 GNA11P29992 359 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 TXKP42681 527 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 AMPD2Q01433 879 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 MCM6Q14566 821 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 WHAMMP3Q1A5X7 153 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 POTEDQ86YR6 584 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 NOA1Q8NC60 698 aaKnown RBP20.09■□□□□ 0.81
VIM-206ENST00000487938 CNOT6LQ96LI5 555 aaKnown RBP20.09■□□□□ 0.81
VIM-206ENST00000487938 SEC63Q9UGP8 760 aaKnown RBP20.09■□□□□ 0.81
VIM-206ENST00000487938 MTIF2P46199 727 aaKnown RBP20.09■□□□□ 0.81
VIM-206ENST00000487938 FAM193AP78312 1265 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 CCDC122Q5T0U0 273 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 CCDC47Q96A33 483 aaKnown RBP20.09■□□□□ 0.81
VIM-206ENST00000487938 C7orf25Q9BPX7 421 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 MMTAG2Q9BU76 263 aaKnown RBP20.09■□□□□ 0.81
VIM-206ENST00000487938 CUEDC2Q9H467 287 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 RAB21Q9UL25 225 aa20.09■□□□□ 0.81
VIM-206ENST00000487938 FRMPD2Q68DX3 1309 aaPredicted RBP20.08■□□□□ 0.81
VIM-206ENST00000487938 SNED1Q8TER0 1413 aa20.08■□□□□ 0.81
VIM-206ENST00000487938 GPR75-ASB3A0A0A6YYF3 556 aa20.08■□□□□ 0.81
VIM-206ENST00000487938 SLC39A2Q9NP94 309 aa20.08■□□□□ 0.81
VIM-206ENST00000487938 NAV1Q8NEY1 1877 aa20.08■□□□□ 0.81
VIM-206ENST00000487938 POTEB2H3BUK9 544 aa20.07■□□□□ 0.8
VIM-206ENST00000487938 MAP2K7O14733 419 aa20.07■□□□□ 0.8
VIM-206ENST00000487938 VSNL1P62760 191 aa20.07■□□□□ 0.8
VIM-206ENST00000487938 NOC3LQ8WTT2 800 aaKnown RBP20.07■□□□□ 0.8
VIM-206ENST00000487938 RPGRQ92834 1020 aaKnown RBP20.07■□□□□ 0.8
VIM-206ENST00000487938 HAUS4Q9H6D7 363 aa20.07■□□□□ 0.8
VIM-206ENST00000487938 NHSQ6T4R5 1651 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms