RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 BORCS6Q96GS4 357 aa5.48□□□□□ -1.53
VPS50-216ENST00000484954 SEC16BQ96JE7 1060 aa5.48□□□□□ -1.53
VPS50-216ENST00000484954 FCRL3Q96P31 734 aaPredicted RBP5.48□□□□□ -1.53
VPS50-216ENST00000484954 GCM1Q9NP62 436 aa5.48□□□□□ -1.53
VPS50-216ENST00000484954 CCDC9Q9Y3X0 531 aaKnown RBP5.48□□□□□ -1.53
VPS50-216ENST00000484954 SASH1O94885 1247 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 CD3EP07766 207 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 ITGA4P13612 1032 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 PNLIPP16233 465 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 ATF4P18848 351 aaPredicted RBP5.47□□□□□ -1.53
VPS50-216ENST00000484954 SLC7A5Q01650 507 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 CWF19L1Q69YN2 538 aaKnown RBP5.47□□□□□ -1.53
VPS50-216ENST00000484954 FEZF2Q8TBJ5 459 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 PANK1Q8TE04 598 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 CPLX3Q8WVH0 158 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 PHAXQ9H814 394 aaKnown RBP5.47□□□□□ -1.53
VPS50-216ENST00000484954 CRTAC1Q9NQ79 661 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 IMPACTQ9P2X3 320 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 TAF6LQ9Y6J9 622 aa5.47□□□□□ -1.53
VPS50-216ENST00000484954 OR14I1A6ND48 311 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 RFXAPO00287 272 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 FGF10O15520 208 aaPredicted RBP5.46□□□□□ -1.54
VPS50-216ENST00000484954 SEMA7AO75326 666 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 PRKCAP17252 672 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 ERCC5P28715 1186 aaPredicted RBP5.46□□□□□ -1.54
VPS50-216ENST00000484954 HEATR6Q6AI08 1181 aaKnown RBP5.46□□□□□ -1.54
VPS50-216ENST00000484954 GALNT18Q6P9A2 607 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 ZNF513Q8N8E2 541 aaPredicted RBP5.46□□□□□ -1.54
VPS50-216ENST00000484954 NUP43Q8NFH3 380 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 OR6P1Q8NGX9 317 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 LGR4Q9BXB1 951 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 WHRNQ9P202 907 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 APEX2Q9UBZ4 518 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 MRVI1Q9Y6F6 885 aa5.46□□□□□ -1.54
VPS50-216ENST00000484954 WTIPA6NIX2 430 aaPredicted RBP5.45□□□□□ -1.54
VPS50-216ENST00000484954 PEX10O60683 326 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 VAMP4O75379 141 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 PI3P19957 117 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 VIPR1P32241 457 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 CASP7P55210 303 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 ERVFRD-1P60508 538 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 MVKQ03426 396 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 TCEAL1Q15170 157 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 VMACQ2NL98 169 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 DPY19L1Q2PZI1 675 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 KIAA1211LQ6NV74 962 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 TMEM151BQ8IW70 566 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 NAT16Q8N8M0 369 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 CGGBP1Q9UFW8 167 aaPredicted RBP5.45□□□□□ -1.54
VPS50-216ENST00000484954 MBD1Q9UIS9 605 aaPredicted RBP5.45□□□□□ -1.54
VPS50-216ENST00000484954 ACSL6Q9UKU0 697 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 SF3B6Q9Y3B4 125 aaKnown RBP5.45□□□□□ -1.54
VPS50-216ENST00000484954 SLC12A7Q9Y666 1083 aa5.45□□□□□ -1.54
VPS50-216ENST00000484954 A0A087WZG4 1122 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 TEX51A0A1B0GUA7 166 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 A0A1W2PQ45 241 aaPredicted RBP5.44□□□□□ -1.54
VPS50-216ENST00000484954 A0A1W2PQY0 241 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 STXBP3O00186 592 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 TCF3P15923 654 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 EPHB3P54753 998 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 SRSF3P84103 164 aaKnown RBP5.44□□□□□ -1.54
VPS50-216ENST00000484954 CYP4F8P98187 520 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 ZXDCQ2QGD7 858 aaPredicted RBP5.44□□□□□ -1.54
VPS50-216ENST00000484954 VHLLQ6RSH7 139 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 ADAT2Q7Z6V5 191 aaKnown RBP5.44□□□□□ -1.54
VPS50-216ENST00000484954 PTCHD1Q96NR3 888 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 CNTD2Q9H8S5 307 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 CAPN10Q9HC96 672 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 TNFRSF12AQ9NP84 129 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 KLHL14Q9P2G3 628 aa5.44□□□□□ -1.54
VPS50-216ENST00000484954 DIS3Q9Y2L1 958 aaKnown RBP5.44□□□□□ -1.54
VPS50-216ENST00000484954 NUDT19A8MXV4 375 aa5.43□□□□□ -1.54
VPS50-216ENST00000484954 SMAD7O15105 426 aaKnown RBP5.43□□□□□ -1.54
VPS50-216ENST00000484954 INSRRP14616 1297 aa5.43□□□□□ -1.54
VPS50-216ENST00000484954 ENDOUP21128 410 aaKnown RBP5.43□□□□□ -1.54
VPS50-216ENST00000484954 YBX1P67809 324 aaKnown RBP5.43□□□□□ -1.54
VPS50-216ENST00000484954 POU4F1Q01851 419 aa5.43□□□□□ -1.54
VPS50-216ENST00000484954 PUM1Q14671 1186 aaKnown RBP eCLIP5.43□□□□□ -1.54
VPS50-216ENST00000484954 ERICH6BQ5W0A0 696 aa5.43□□□□□ -1.54
VPS50-216ENST00000484954 GBP3Q9H0R5 595 aa5.43□□□□□ -1.54
VPS50-216ENST00000484954 PLA2G2DQ9UNK4 145 aa5.43□□□□□ -1.54
VPS50-216ENST00000484954 HCFC2Q9Y5Z7 792 aa5.43□□□□□ -1.54
VPS50-216ENST00000484954 B2RBV5 119 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 AURKAO14965 403 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 TACR1P25103 407 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 NOP2P46087 812 aaKnown RBP5.42□□□□□ -1.54
VPS50-216ENST00000484954 RBM25P49756 843 aaKnown RBP5.42□□□□□ -1.54
VPS50-216ENST00000484954 HLA-DQA1Q5Y7H0 255 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 ARHGEF39Q8N4T4 335 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 SYT8Q8NBV8 401 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 MICAL1Q8TDZ2 1067 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 TINF2Q9BSI4 451 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 ADAM7Q9H2U9 754 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 FBLN5Q9UBX5 448 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 STRIP2Q9ULQ0 834 aa5.42□□□□□ -1.54
VPS50-216ENST00000484954 PPP1R11O60927 126 aaPredicted RBP5.41□□□□□ -1.54
VPS50-216ENST00000484954 PPM1BO75688 479 aa5.41□□□□□ -1.54
VPS50-216ENST00000484954 ETFBP38117 255 aa5.41□□□□□ -1.54
VPS50-216ENST00000484954 AFF3P51826 1226 aaKnown RBP5.41□□□□□ -1.54
VPS50-216ENST00000484954 CDR1P51861 262 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms