RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 TRAPPC10P48553 1259 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 SLC4A3P48751 1232 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 NAPAP54920 295 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 NLRP5P59047 1200 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 ORC2Q13416 577 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-225ENST00000481502 WWC2Q6AWC2 1192 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 CLEC17AQ6ZS10 378 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 HEATR3Q7Z4Q2 680 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 HOMER1Q86YM7 354 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 IFNL1Q8IU54 200 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 BLIDQ8IZY5 108 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 CUL5Q93034 780 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 ATG4CQ96DT6 458 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 NAP1L4Q99733 375 aaKnown RBP9.48□□□□□ -0.89
SYNE1-225ENST00000481502 MROH8Q9H579 483 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 PSTPIP2Q9H939 334 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 FBXO28Q9NVF7 368 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 MORC2Q9Y6X9 1032 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-225ENST00000481502 ZNF536O15090 1300 aa9.48□□□□□ -0.89
SYNE1-225ENST00000481502 M0R2N6 131 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 CA12O43570 354 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 KRT2P35908 639 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 CLK2P49760 499 aaKnown RBP9.47□□□□□ -0.89
SYNE1-225ENST00000481502 ADCY7P51828 1080 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 KIF23Q02241 960 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-225ENST00000481502 TMEM132BQ14DG7 1078 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 FAM110CQ1W6H9 321 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 NOM1Q5C9Z4 860 aaKnown RBP9.47□□□□□ -0.89
SYNE1-225ENST00000481502 RILPL1Q5EBL4 403 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 RASGRP2Q7LDG7 609 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 ABRAQ8N0Z2 381 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 GPRC5AQ8NFJ5 357 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 SMCR8Q8TEV9 937 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-225ENST00000481502 CAPNS2Q96L46 248 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 PTPN18Q99952 460 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 SPATC1LQ9H0A9 340 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 EHMT1Q9H9B1 1298 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 ZFYVE28Q9HCC9 887 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 RBPJLQ9UBG7 517 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 CCPG1Q9ULG6 757 aa9.47□□□□□ -0.89
SYNE1-225ENST00000481502 BAZ2BQ9UIF8 2168 aaKnown RBP9.47□□□□□ -0.89
SYNE1-225ENST00000481502 RLFQ13129 1914 aa9.46□□□□□ -0.89
SYNE1-225ENST00000481502 GCOM1H8Y6P7 765 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-225ENST00000481502 TLR2O60603 784 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 PPP1R11O60927 126 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-225ENST00000481502 BMP15O95972 392 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 F13A1P00488 732 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 POLR2MP0CAP2 368 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 HSPA6P17066 643 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 NPY5RQ15761 445 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 XRRA1Q6P2D8 792 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 MOXD1Q6UVY6 613 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 KRT25Q7Z3Z0 450 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 NOSTRINQ8IVI9 506 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 DIS3L2Q8IYB7 885 aaKnown RBP9.46□□□□□ -0.9
SYNE1-225ENST00000481502 REXO1Q8N1G1 1221 aaKnown RBP9.46□□□□□ -0.9
SYNE1-225ENST00000481502 FAM43AQ8N2R8 423 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 TRERF1Q96PN7 1200 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 CPVLQ9H3G5 476 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 ACAD9Q9H845 621 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 VPS54Q9P1Q0 977 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 CFAP45Q9UL16 551 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 PFASO15067 1338 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 MYH6P13533 1939 aa9.46□□□□□ -0.9
SYNE1-225ENST00000481502 PARP14Q460N5 1801 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 VPS37CA5D8V6 355 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-225ENST00000481502 B4DLN1 442 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 IGF2BP3O00425 579 aaKnown RBP eCLIP9.45□□□□□ -0.9
SYNE1-225ENST00000481502 MAPK4P31152 587 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 HSD17B4P51659 736 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 USP11P51784 963 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 ERVK-9P63128 1117 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 ERVK-24P63145 666 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 DGKZQ13574 1117 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 GNL2Q13823 731 aaKnown RBP9.45□□□□□ -0.9
SYNE1-225ENST00000481502 TAF1CQ15572 869 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-225ENST00000481502 SNRNP48Q6IEG0 339 aaKnown RBP9.45□□□□□ -0.9
SYNE1-225ENST00000481502 TYW1BQ6NUM6 668 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 CPXCR1Q8N123 301 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 SPRYD3Q8NCJ5 442 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 DNERQ8NFT8 737 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 CLEC4DQ8WXI8 215 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 GPKOWQ92917 476 aaPredicted RBP eCLIP9.45□□□□□ -0.9
SYNE1-225ENST00000481502 TNFRSF25Q93038 417 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 COA7Q96BR5 231 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 AGBL1Q96MI9 1066 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 ZNF396Q96N95 335 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-225ENST00000481502 AIFM3Q96NN9 605 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 RAVER2Q9HCJ3 691 aaKnown RBP9.45□□□□□ -0.9
SYNE1-225ENST00000481502 SAGE1Q9NXZ1 904 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 NOL7Q9UMY1 257 aaKnown RBP9.45□□□□□ -0.9
SYNE1-225ENST00000481502 A0A0G2JMZ2 1700 aa9.45□□□□□ -0.9
SYNE1-225ENST00000481502 CCDC194A0A1B0GVG4 234 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 hCG_1642624A0A1W2PR95 340 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 SPDYE3A6NKU9 549 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 BTBD18B2RXH4 712 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 MEIS2O14770 477 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 STAM2O75886 525 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 CYP3A4P08684 503 aa9.44□□□□□ -0.9
SYNE1-225ENST00000481502 BCRP11274 1271 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms