RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 BIN2Q9UBW5 565 aaPredicted RBP20.15■□□□□ 0.82
UPF3A-206ENST00000480362 MRPL11Q9Y3B7 192 aaKnown RBP20.15■□□□□ 0.82
UPF3A-206ENST00000480362 ABCB11O95342 1321 aa20.15■□□□□ 0.82
UPF3A-206ENST00000480362 FAM205CA6NFA0 338 aa20.14■□□□□ 0.81
UPF3A-206ENST00000480362 TMEM88BA6NKF7 163 aa20.14■□□□□ 0.81
UPF3A-206ENST00000480362 OSBPP22059 807 aa20.14■□□□□ 0.81
UPF3A-206ENST00000480362 MCM4P33991 863 aa20.14■□□□□ 0.81
UPF3A-206ENST00000480362 KRT85P78386 507 aa20.14■□□□□ 0.81
UPF3A-206ENST00000480362 ATL3Q6DD88 541 aa20.14■□□□□ 0.81
UPF3A-206ENST00000480362 REXO1Q8N1G1 1221 aaKnown RBP20.14■□□□□ 0.81
UPF3A-206ENST00000480362 REPS2Q8NFH8 660 aa20.14■□□□□ 0.81
UPF3A-206ENST00000480362 GLT8D2Q9H1C3 349 aa20.14■□□□□ 0.81
UPF3A-206ENST00000480362 ASCC2Q9H1I8 757 aaPredicted RBP20.14■□□□□ 0.81
UPF3A-206ENST00000480362 ABT1Q9ULW3 272 aaKnown RBP20.14■□□□□ 0.81
UPF3A-206ENST00000480362 OAZ1P54368 228 aa20.13■□□□□ 0.81
UPF3A-206ENST00000480362 NFKBIBQ15653 356 aa20.13■□□□□ 0.81
UPF3A-206ENST00000480362 JAKMIP3Q5VZ66 844 aa20.13■□□□□ 0.81
UPF3A-206ENST00000480362 PIK3AP1Q6ZUJ8 805 aa20.13■□□□□ 0.81
UPF3A-206ENST00000480362 BRI3BPQ8WY22 251 aa20.13■□□□□ 0.81
UPF3A-206ENST00000480362 TMEM260Q9NX78 707 aa20.13■□□□□ 0.81
UPF3A-206ENST00000480362 CFAP45Q9UL16 551 aa20.13■□□□□ 0.81
UPF3A-206ENST00000480362 PNMA2Q9UL42 364 aa20.13■□□□□ 0.81
UPF3A-206ENST00000480362 MYH15Q9Y2K3 1946 aa20.12■□□□□ 0.81
UPF3A-206ENST00000480362 CCDC194A0A1B0GVG4 234 aa20.12■□□□□ 0.81
UPF3A-206ENST00000480362 ALAS1P13196 640 aa20.12■□□□□ 0.81
UPF3A-206ENST00000480362 CLK2P49760 499 aaKnown RBP20.12■□□□□ 0.81
UPF3A-206ENST00000480362 CEBPZQ03701 1054 aaKnown RBP20.12■□□□□ 0.81
UPF3A-206ENST00000480362 TMEM132BQ14DG7 1078 aa20.12■□□□□ 0.81
UPF3A-206ENST00000480362 UBE2SQ16763 222 aa20.12■□□□□ 0.81
UPF3A-206ENST00000480362 USP28Q96RU2 1077 aa20.12■□□□□ 0.81
UPF3A-206ENST00000480362 GDPD2Q9HCC8 539 aa20.12■□□□□ 0.81
UPF3A-206ENST00000480362 SMCHD1A6NHR9 2005 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 BTBD19C9JJ37 291 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 GOLGA6L22H0YM25 854 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 OPLAHO14841 1288 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 ATP2A1O14983 1001 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 FIBPO43427 364 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 TOB1P50616 345 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-206ENST00000480362 HERVK_113P62684 666 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 RILPL1Q5EBL4 403 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 USP17L6PQ6QN14 398 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 POTEEQ6S8J3 1075 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 LBX2Q6XYB7 198 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 KRT25Q7Z3Z0 450 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 ANKRD23Q86SG2 305 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 FTOQ9C0B1 505 aaKnown RBP eCLIP20.11■□□□□ 0.81
UPF3A-206ENST00000480362 ZNF214Q9UL59 606 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-206ENST00000480362 NOL7Q9UMY1 257 aaKnown RBP20.11■□□□□ 0.81
UPF3A-206ENST00000480362 TCHHQ07283 1943 aa20.11■□□□□ 0.81
UPF3A-206ENST00000480362 PDHXO00330 501 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 MEIS2O14770 477 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 SLC10A3P09131 477 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 ATP2B1P20020 1258 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 PLS1Q14651 629 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 NONOQ15233 471 aaKnown RBP eCLIP20.1■□□□□ 0.81
UPF3A-206ENST00000480362 MB21D1Q8N884 522 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 CLEC4DQ8WXI8 215 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 TBC1D5Q92609 795 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 RTEL1Q9NZ71 1219 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 PNMA3Q9UL41 463 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 SLC45A1Q9Y2W3 748 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 CLIC4Q9Y696 253 aa20.1■□□□□ 0.81
UPF3A-206ENST00000480362 COL11A1P12107 1806 aaPredicted RBP20.1■□□□□ 0.81
UPF3A-206ENST00000480362 TESPA1A2RU30 521 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-206ENST00000480362 MANSC4A6NHS7 340 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-206ENST00000480362 STAT3P40763 770 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 ANO1Q5XXA6 986 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 SNRNP48Q6IEG0 339 aaKnown RBP20.09■□□□□ 0.81
UPF3A-206ENST00000480362 CCDC102AQ96A19 550 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 HHIPL1Q96JK4 782 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 SPATA32Q96LK8 384 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 TRERF1Q96PN7 1200 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 PTPN18Q99952 460 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 TEX13BQ9BXU2 312 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 SCAND2PQ9GZW5 306 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-206ENST00000480362 HOMER2Q9NSB8 354 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 POLR3EQ9NVU0 708 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 BTBD7Q9P203 1132 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 RIPK3Q9Y572 518 aa20.09■□□□□ 0.81
UPF3A-206ENST00000480362 FAM155AB1AL88 458 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-206ENST00000480362 GCOM1H8Y6P7 765 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-206ENST00000480362 PIK3CDO00329 1044 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 PEX10O60683 326 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 PRPF40AO75400 957 aaKnown RBP20.08■□□□□ 0.81
UPF3A-206ENST00000480362 CFBP00751 764 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 POLR2MP0CAP2 368 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 HOXA13P31271 388 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-206ENST00000480362 NBR1Q14596 966 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 SF3A1Q15459 793 aaKnown RBP20.08■□□□□ 0.81
UPF3A-206ENST00000480362 INF2Q27J81 1249 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 MUM1L1Q5H9M0 696 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 MCTP2Q6DN12 878 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 TEX2Q8IWB9 1127 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 FAM43AQ8N2R8 423 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 LEO1Q8WVC0 666 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-206ENST00000480362 PGBD1Q96JS3 809 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 RNF146Q9NTX7 359 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 RCOR1Q9UKL0 485 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 PCDHB6Q9Y5E3 794 aa20.08■□□□□ 0.81
UPF3A-206ENST00000480362 NFIBO00712 420 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms