RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 LDHBP07195 334 aaKnown RBP20.28■□□□□ 0.84
CCM2-209ENST00000477605 LDHCP07864 332 aa20.28■□□□□ 0.84
CCM2-209ENST00000477605 SMARCA1P28370 1054 aa20.28■□□□□ 0.84
CCM2-209ENST00000477605 HOXA7P31268 230 aaPredicted RBP20.28■□□□□ 0.84
CCM2-209ENST00000477605 BICDL1Q6ZP65 573 aa20.28■□□□□ 0.84
CCM2-209ENST00000477605 NBPF5PQ86XG9 351 aaPredicted RBP20.28■□□□□ 0.84
CCM2-209ENST00000477605 EXOC4Q96A65 974 aa20.28■□□□□ 0.84
CCM2-209ENST00000477605 TRIM47Q96LD4 638 aa20.28■□□□□ 0.84
CCM2-209ENST00000477605 SPZ1Q9BXG8 430 aa20.28■□□□□ 0.84
CCM2-209ENST00000477605 TSPY3P0CV98 308 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 TSPY8P0CW00 308 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 MCM3P25205 808 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 TYW1BQ6NUM6 668 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 WDR93Q6P2C0 686 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 CCDC170Q8IYT3 715 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 RPGRIP1Q96KN7 1286 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 C7orf25Q9BPX7 421 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 ZMYND12Q9H0C1 365 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 TMEM60Q9H2L4 133 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 MAPK8IP1Q9UQF2 711 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 LEMD3Q9Y2U8 911 aa20.27■□□□□ 0.84
CCM2-209ENST00000477605 RPS6KA4O75676 772 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 CCNE1P24864 410 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 AMPD3Q01432 767 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 PNKPQ96T60 521 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 CHP1Q99653 195 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 REXO2Q9Y3B8 237 aaKnown RBP20.26■□□□□ 0.83
CCM2-209ENST00000477605 CYLC1P35663 651 aaPredicted RBP20.26■□□□□ 0.83
CCM2-209ENST00000477605 CDK17Q00537 523 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 INF2Q27J81 1249 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 FIGNQ5HY92 759 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 TRAPPC11Q7Z392 1133 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 HEATR3Q7Z4Q2 680 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 RASGRP4Q8TDF6 673 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 EXOC1Q9NV70 894 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 ZNHIT6Q9NWK9 470 aaKnown RBP20.26■□□□□ 0.83
CCM2-209ENST00000477605 BTAF1O14981 1849 aa20.26■□□□□ 0.83
CCM2-209ENST00000477605 TRIM49BA6NDI0 452 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 ERICH4A6NGS2 130 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 PMS1P54277 932 aaKnown RBP20.25■□□□□ 0.83
CCM2-209ENST00000477605 P2RX5Q93086 422 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 CYTH3O43739 400 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 OR52Z1P0C646 297 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 GNA11P29992 359 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 TM4SF1P30408 202 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 TXNRD1Q16881 649 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 PAPD7Q5XG87 772 aaKnown RBP20.25■□□□□ 0.83
CCM2-209ENST00000477605 C15orf52Q6ZUT6 534 aaKnown RBP20.25■□□□□ 0.83
CCM2-209ENST00000477605 CABP7Q86V35 215 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 CSGALNACT2Q8N6G5 542 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 TMEM47Q9BQJ4 181 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 TUBGCP2Q9BSJ2 902 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 ACBD3Q9H3P7 528 aa20.25■□□□□ 0.83
CCM2-209ENST00000477605 A0A1W2PQJ5 194 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 KRT86O43790 486 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 ABL1P00519 1130 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 ZBED6P86452 979 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 NONOQ15233 471 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCM2-209ENST00000477605 SLC35G1Q2M3R5 365 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 WDR59Q6PJI9 974 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 SH3RF3Q8TEJ3 882 aaPredicted RBP20.24■□□□□ 0.83
CCM2-209ENST00000477605 DUSP9Q99956 384 aaKnown RBP20.24■□□□□ 0.83
CCM2-209ENST00000477605 TTYH3Q9C0H2 523 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 C6orf50Q9HD87 102 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 ABCB6Q9NP58 842 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 GUCA1BQ9UMX6 200 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 FLT1P17948 1338 aa20.24■□□□□ 0.83
CCM2-209ENST00000477605 EIF3CLB5ME19 914 aaKnown RBP20.23■□□□□ 0.83
CCM2-209ENST00000477605 MUM1L1Q5H9M0 696 aa20.23■□□□□ 0.83
CCM2-209ENST00000477605 DYNLL2Q96FJ2 89 aa20.23■□□□□ 0.83
CCM2-209ENST00000477605 EIF3CQ99613 913 aaKnown RBP20.23■□□□□ 0.83
CCM2-209ENST00000477605 TRIM9Q9C026 710 aa20.23■□□□□ 0.83
CCM2-209ENST00000477605 ZCCHC17Q9NP64 241 aaKnown RBP20.23■□□□□ 0.83
CCM2-209ENST00000477605 PP2D1A8MPX8 630 aa20.23■□□□□ 0.83
CCM2-209ENST00000477605 ZPR1O75312 459 aa20.23■□□□□ 0.83
CCM2-209ENST00000477605 IPO7O95373 1038 aaKnown RBP20.23■□□□□ 0.83
CCM2-209ENST00000477605 CKAP4Q07065 602 aaKnown RBP20.23■□□□□ 0.83
CCM2-209ENST00000477605 TXNRD3Q86VQ6 643 aa20.23■□□□□ 0.83
CCM2-209ENST00000477605 ZSCAN29Q8IWY8 852 aaPredicted RBP20.23■□□□□ 0.83
CCM2-209ENST00000477605 ANO9A1A5B4 782 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 USP17L3A6NCW0 530 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 USP17L4A6NCW7 530 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 KLRF2D3W0D1 207 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 PLCG1P19174 1290 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 HERVK_113P62684 666 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 CCDC122Q5T0U0 273 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 USP17L1Q7RTZ2 530 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 ERGIC2Q96RQ1 377 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 ADAM21Q9UKJ8 722 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 SAR1BQ9Y6B6 198 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 COL24A1Q17RW2 1714 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 CCDC88AQ3V6T2 1871 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 MYH13Q9UKX3 1938 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 ESYT2A0FGR8 921 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 hCG_1984214I3L0E3 225 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 RASA1P20936 1047 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 TBC1D8BQ0IIM8 1120 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 CNNM4Q6P4Q7 775 aa20.22■□□□□ 0.83
CCM2-209ENST00000477605 ZNF713Q8N859 430 aaPredicted RBP20.22■□□□□ 0.83
CCM2-209ENST00000477605 VIPAS39Q9H9C1 493 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms