RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-215ENST00000477547 STK36Q9NRP7 1315 aa17.72■□□□□ 0.43
SEC13-215ENST00000477547 PNMA6FA0A0J9YX94 578 aa17.72■□□□□ 0.43
SEC13-215ENST00000477547 PTPDC1A2A3K4 754 aa17.72■□□□□ 0.43
SEC13-215ENST00000477547 STAT3P40763 770 aa17.72■□□□□ 0.43
SEC13-215ENST00000477547 CCNA1P78396 465 aa17.72■□□□□ 0.43
SEC13-215ENST00000477547 AKAP17AQ02040 695 aaKnown RBP17.72■□□□□ 0.43
SEC13-215ENST00000477547 FBXO11Q86XK2 927 aa17.72■□□□□ 0.43
SEC13-215ENST00000477547 NSUN7Q8NE18 718 aaKnown RBP17.72■□□□□ 0.43
SEC13-215ENST00000477547 ERO1AQ96HE7 468 aa17.72■□□□□ 0.43
SEC13-215ENST00000477547 AGBL1Q96MI9 1066 aa17.72■□□□□ 0.43
SEC13-215ENST00000477547 MOV10L1Q9BXT6 1211 aaKnown RBP17.72■□□□□ 0.43
SEC13-215ENST00000477547 PNMA2Q9UL42 364 aa17.72■□□□□ 0.43
SEC13-215ENST00000477547 PPP1R11O60927 126 aaPredicted RBP17.71■□□□□ 0.42
SEC13-215ENST00000477547 DTNBO60941 627 aa17.71■□□□□ 0.42
SEC13-215ENST00000477547 FMNL1O95466 1100 aaPredicted RBP17.71■□□□□ 0.42
SEC13-215ENST00000477547 CTDNEP1O95476 244 aa17.71■□□□□ 0.42
SEC13-215ENST00000477547 ALAS1P13196 640 aa17.71■□□□□ 0.42
SEC13-215ENST00000477547 COPB2P35606 906 aa17.71■□□□□ 0.42
SEC13-215ENST00000477547 SSRP1Q08945 709 aaKnown RBP17.71■□□□□ 0.42
SEC13-215ENST00000477547 HEATR3Q7Z4Q2 680 aa17.71■□□□□ 0.42
SEC13-215ENST00000477547 RIOX2Q8IUF8 465 aa17.71■□□□□ 0.42
SEC13-215ENST00000477547 GPKOWQ92917 476 aaPredicted RBP eCLIP17.71■□□□□ 0.424e-7■□□□□ 8.6
SEC13-215ENST00000477547 AMNQ9BXJ7 453 aa17.71■□□□□ 0.42
SEC13-215ENST00000477547 EFCC1Q9HA90 598 aa17.71■□□□□ 0.42
SEC13-215ENST00000477547 HOMER2Q9NSB8 354 aa17.71■□□□□ 0.42
SEC13-215ENST00000477547 PRPF3O43395 683 aaKnown RBP17.7■□□□□ 0.42
SEC13-215ENST00000477547 JAK2O60674 1132 aa17.7■□□□□ 0.42
SEC13-215ENST00000477547 Q3C1V9 767 aa17.7■□□□□ 0.42
SEC13-215ENST00000477547 WDR78Q5VTH9 848 aa17.7■□□□□ 0.42
SEC13-215ENST00000477547 NCAPG2Q86XI2 1143 aa17.7■□□□□ 0.42
SEC13-215ENST00000477547 CCAR1Q8IX12 1150 aaKnown RBP17.7■□□□□ 0.42
SEC13-215ENST00000477547 SHCBP1Q8NEM2 672 aa17.7■□□□□ 0.42
SEC13-215ENST00000477547 PORCNQ9H237 461 aa17.7■□□□□ 0.42
SEC13-215ENST00000477547 CWC22Q9HCG8 908 aaKnown RBP17.7■□□□□ 0.42
SEC13-215ENST00000477547 RNF146Q9NTX7 359 aa17.7■□□□□ 0.42
SEC13-215ENST00000477547 V9GY48 417 aaPredicted RBP17.7■□□□□ 0.42
SEC13-215ENST00000477547 LRRC37A2A6NM11 1700 aa17.7■□□□□ 0.42
SEC13-215ENST00000477547 ABCB11O95342 1321 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 SZT2Q5T011 3432 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 ECM2O94769 699 aaPredicted RBP17.69■□□□□ 0.42
SEC13-215ENST00000477547 SLC25A27O95847 323 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 SCG2P13521 617 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 ERCC3P19447 782 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 SP3Q02447 781 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 PFKFB3Q16875 520 aaPredicted RBP17.69■□□□□ 0.42
SEC13-215ENST00000477547 TKFCQ3LXA3 575 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 WWC2Q6AWC2 1192 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 DDX11Q96FC9 970 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 LLPHQ9BRT6 129 aaKnown RBP17.69■□□□□ 0.42
SEC13-215ENST00000477547 ORC3Q9UBD5 711 aaPredicted RBP17.69■□□□□ 0.42
SEC13-215ENST00000477547 RIPK3Q9Y572 518 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 PCDHA1Q9Y5I3 950 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 MCM3APO60318 1980 aa17.69■□□□□ 0.42
SEC13-215ENST00000477547 TRIOBPQ9H2D6 2365 aa17.68■□□□□ 0.42
SEC13-215ENST00000477547 hCG_1984214I3L0E3 225 aa17.68■□□□□ 0.42
SEC13-215ENST00000477547 DEXIO95424 95 aa17.68■□□□□ 0.42
SEC13-215ENST00000477547 MAPK4P31152 587 aa17.68■□□□□ 0.42
SEC13-215ENST00000477547 LACTBP83111 547 aaPredicted RBP17.68■□□□□ 0.42
SEC13-215ENST00000477547 TRAF1Q13077 416 aa17.68■□□□□ 0.42
SEC13-215ENST00000477547 ZNF713Q8N859 430 aaPredicted RBP17.68■□□□□ 0.42
SEC13-215ENST00000477547 COA7Q96BR5 231 aa17.68■□□□□ 0.42
SEC13-215ENST00000477547 TMEM106CQ9BVX2 250 aa17.68■□□□□ 0.42
SEC13-215ENST00000477547 ACAD9Q9H845 621 aa17.68■□□□□ 0.42
SEC13-215ENST00000477547 H0YGN5 161 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 MYCP01106 439 aaPredicted RBP17.67■□□□□ 0.42
SEC13-215ENST00000477547 NAPAP54920 295 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 HMGN5P82970 282 aaKnown RBP17.67■□□□□ 0.42
SEC13-215ENST00000477547 CUL4AQ13619 759 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 KIF22Q14807 665 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 PKN1Q16512 942 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 MUM1L1Q5H9M0 696 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 CHST13Q8NET6 341 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 SMARCC2Q8TAQ2 1214 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 ZNF333Q96JL9 665 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 TRERF1Q96PN7 1200 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 MROH8Q9H579 483 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 FBXO40Q9UH90 709 aa17.67■□□□□ 0.42
SEC13-215ENST00000477547 STXBP3O00186 592 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 NFIBO00712 420 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 TNPO2O14787 897 aaKnown RBP17.66■□□□□ 0.42
SEC13-215ENST00000477547 FCGRTP55899 365 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 BECN1Q14457 450 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 PPP1R18Q6NYC8 613 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 GPR142Q7Z601 462 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 WASF1Q92558 559 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 AIFM3Q96NN9 605 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 ARHGAP39Q9C0H5 1083 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 TSHZ2Q9NRE2 1034 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 MRPL11Q9Y3B7 192 aaKnown RBP17.66■□□□□ 0.42
SEC13-215ENST00000477547 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.66■□□□□ 0.42
SEC13-215ENST00000477547 IVNS1ABPQ9Y6Y0 642 aa17.66■□□□□ 0.42
SEC13-215ENST00000477547 ANP32AP39687 249 aaKnown RBP17.65■□□□□ 0.42
SEC13-215ENST00000477547 CCDC148Q8NFR7 591 aa17.65■□□□□ 0.42
SEC13-215ENST00000477547 CLEC4DQ8WXI8 215 aa17.65■□□□□ 0.42
SEC13-215ENST00000477547 MMP19Q99542 508 aa17.65■□□□□ 0.42
SEC13-215ENST00000477547 BARHL2Q9NY43 387 aa17.65■□□□□ 0.42
SEC13-215ENST00000477547 VPS54Q9P1Q0 977 aa17.65■□□□□ 0.42
SEC13-215ENST00000477547 CEP290O15078 2479 aa17.65■□□□□ 0.42
SEC13-215ENST00000477547 MYH7BA7E2Y1 1941 aa17.64■□□□□ 0.41
SEC13-215ENST00000477547 HSP90AA1P07900 732 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms