RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ELMSAN1Q6PJG2 1045 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 ATF7IPQ6VMQ6 1270 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 MOB2Q70IA6 237 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 ATG9AQ7Z3C6 839 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 RASAL3Q86YV0 1011 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 SCG3Q8WXD2 468 aaKnown RBP8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 LPIN2Q92539 896 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 FRAT1Q92837 279 aaPredicted RBP8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 PRMT6Q96LA8 375 aaPredicted RBP8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 MEIS3Q99687 375 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 SIL1Q9H173 461 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 DEFB129Q9H1M3 183 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 PCDHAC2Q9Y5I4 1007 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 LAMB1P07942 1786 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 UBE2Q2LH0YL09 131 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 ADAMTS4O75173 837 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 TAL1P17542 331 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 IL15P40933 162 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 CRKP46108 304 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 IRAK1P51617 712 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 MLLT1Q03111 559 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 TNFAIP1Q13829 316 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 ATP2B3Q16720 1220 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 VEZTQ9HBM0 779 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 SAGE1Q9NXZ1 904 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 SUGT1Q9Y2Z0 365 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 MAST3O60307 1309 aa8.43□□□□□ -1.06
CCDC88A-213ENST00000476903 AK9Q5TCS8 1911 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 OTOFQ9HC10 1997 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 SRGAP3O43295 1099 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 HDLBPQ00341 1268 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 PRKG1Q13976 671 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 SUPT20HL1Q3ZLR7 823 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 ZKSCAN2Q63HK3 967 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 WDR66Q8TBY9 1149 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 TEKT1Q969V4 418 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 CLUAP1Q96AJ1 413 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 CSRNP1Q96S65 589 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 MRPL18Q9H0U6 180 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 SMG9Q9H0W8 520 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 TDRD3Q9H7E2 651 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 COPRSQ9NQ92 184 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 GNL3LQ9NVN8 582 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 ZNF70Q9UC06 446 aaPredicted RBP8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 ANGEL1Q9UNK9 670 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 PA2G4Q9UQ80 394 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 ZBED9Q6R2W3 1325 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 MYH2Q9UKX2 1941 aa8.42□□□□□ -1.06
CCDC88A-213ENST00000476903 SSC5DA1L4H1 1573 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 AOX1Q06278 1338 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 UNCXA6NJT0 531 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 POM121CA8CG34 1229 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 COBLO75128 1261 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 GNAI2P04899 355 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 TNNI2P48788 182 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 MTX1Q13505 466 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 RASA3Q14644 834 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 MAP3K11Q16584 847 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 LDLRAD1Q5T700 205 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 POM121Q96HA1 1249 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 ZDHHC15Q96MV8 337 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 MRIQ9BWK5 157 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 C11orf16Q9NQ32 467 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 RNF186Q9NXI6 227 aa8.41□□□□□ -1.06
CCDC88A-213ENST00000476903 TCP10L2B9ZVM9 353 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 ATP9BO43861 1147 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 TRPA1O75762 1119 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 SASH3O75995 380 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 TGFB1P01137 390 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 IDH3AP50213 366 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 GP2P55259 537 aaKnown RBP8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 SREBF2Q12772 1141 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 NBPF12Q5TAG4 269 aaPredicted RBP8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 KRT25Q7Z3Z0 450 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 FTSJ3Q8IY81 847 aaKnown RBP8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 TMEM57Q8N5G2 664 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 TMOD2Q9NZR1 351 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 DENND2AQ9ULE3 1009 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 TNNQ9UQP3 1299 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 AKAP2Q9Y2D5 859 aa8.4□□□□□ -1.06
CCDC88A-213ENST00000476903 SALL1Q9NSC2 1324 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 PHKA1P46020 1223 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 TM4SF4P48230 202 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 NRLP54845 237 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 SETDB1Q15047 1291 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 HHIPL2Q6UWX4 724 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 HFE2Q6ZVN8 426 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 ABHD8Q96I13 439 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 FZD1Q9UP38 647 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 RAXQ9Y2V3 346 aa8.39□□□□□ -1.07
CCDC88A-213ENST00000476903 PDS5AQ29RF7 1337 aaKnown RBP8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 PNMA6EA0A0J9YXQ4 647 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 A0A1B0GUL7 405 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 USP2O75604 605 aaPredicted RBP8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 IGLV1-40P01703 118 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 LDHBP07195 334 aaKnown RBP8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 ZBTB48P10074 688 aaPredicted RBP8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 EPB42P16452 691 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 ADORA1P30542 326 aa8.38□□□□□ -1.07
CCDC88A-213ENST00000476903 TIMM10P62072 90 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms