RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 DEFB123Q8N688 67 aa22.15■■□□□ 1.14
CCDC88B-206ENST00000473405 BADQ92934 168 aa22.15■■□□□ 1.14
CCDC88B-206ENST00000473405 PRUNE2Q8WUY3 3088 aa22.14■■□□□ 1.14
CCDC88B-206ENST00000473405 MOXD2PA6NHM9 499 aa22.14■■□□□ 1.13
CCDC88B-206ENST00000473405 PQBP1O60828 265 aaKnown RBP22.14■■□□□ 1.13
CCDC88B-206ENST00000473405 PDHBP11177 359 aa22.14■■□□□ 1.13
CCDC88B-206ENST00000473405 SYDE2Q5VT97 1194 aa22.14■■□□□ 1.13
CCDC88B-206ENST00000473405 DIAPH3Q9NSV4 1193 aa22.14■■□□□ 1.13
CCDC88B-206ENST00000473405 CUL9Q8IWT3 2517 aa22.14■■□□□ 1.13
CCDC88B-206ENST00000473405 CTAGE5O15320 804 aa22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 CLTBP09497 229 aa22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 C6orf222P0C671 652 aaPredicted RBP22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 SNHG28P0DPA3 235 aa22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 GJA9P57773 515 aa22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 ANKRD33Q7Z3H0 272 aa22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 NUP133Q8WUM0 1156 aa22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 RNF41Q9H4P4 317 aaPredicted RBP22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 GPCPD1Q9NPB8 672 aa22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 STARD7Q9NQZ5 370 aa22.13■■□□□ 1.13
CCDC88B-206ENST00000473405 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.12■■□□□ 1.13
CCDC88B-206ENST00000473405 KIAA0355O15063 1070 aa22.12■■□□□ 1.13
CCDC88B-206ENST00000473405 ZNF543Q08ER8 600 aa22.12■■□□□ 1.13
CCDC88B-206ENST00000473405 C9orf50Q5SZB4 431 aa22.12■■□□□ 1.13
CCDC88B-206ENST00000473405 ESR2Q92731 530 aa22.12■■□□□ 1.13
CCDC88B-206ENST00000473405 TTC14Q96N46 770 aa22.12■■□□□ 1.13
CCDC88B-206ENST00000473405 PURBQ96QR8 312 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-206ENST00000473405 ASB14A6NK59 587 aa22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 ZNF213O14771 459 aa22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 ASGR1P07306 291 aa22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 NKX3-2P78367 333 aa22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 FAAP100Q0VG06 881 aa22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 SHHQ15465 462 aa22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 NSMFQ6X4W1 530 aa22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 ZKSCAN3Q9BRR0 538 aa22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 IL25Q9H293 177 aa22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 SUPT16HQ9Y5B9 1047 aaKnown RBP22.11■■□□□ 1.13
CCDC88B-206ENST00000473405 MYH6P13533 1939 aa22.1■■□□□ 1.13
CCDC88B-206ENST00000473405 HIP1O00291 1037 aa22.1■■□□□ 1.13
CCDC88B-206ENST00000473405 NFIBO00712 420 aa22.1■■□□□ 1.13
CCDC88B-206ENST00000473405 PDE4AP27815 886 aa22.1■■□□□ 1.13
CCDC88B-206ENST00000473405 PCSK9Q8NBP7 692 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-206ENST00000473405 TOX2Q96NM4 488 aa22.1■■□□□ 1.13
CCDC88B-206ENST00000473405 SPC25Q9HBM1 224 aa22.1■■□□□ 1.13
CCDC88B-206ENST00000473405 GNEQ9Y223 722 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-206ENST00000473405 ELP1O95163 1332 aa22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 PTGS1P23219 599 aa22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 TNFAIP2Q03169 654 aa22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 GNASQ5JWF2 1037 aa22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 TAPT1Q6NXT6 567 aa22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 FBXO16Q8IX29 292 aaPredicted RBP22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 MORC4Q8TE76 937 aa22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 GLT1D1Q96MS3 346 aa22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 DSCC1Q9BVC3 393 aa22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 MTMR10Q9NXD2 777 aa22.09■■□□□ 1.13
CCDC88B-206ENST00000473405 KDM4AO75164 1064 aa22.08■■□□□ 1.13
CCDC88B-206ENST00000473405 GSPT1P15170 499 aaKnown RBP22.08■■□□□ 1.13
CCDC88B-206ENST00000473405 CDK7P50613 346 aa22.08■■□□□ 1.13
CCDC88B-206ENST00000473405 BAATQ14032 418 aaPredicted RBP22.08■■□□□ 1.13
CCDC88B-206ENST00000473405 DGKHQ86XP1 1220 aa22.08■■□□□ 1.13
CCDC88B-206ENST00000473405 CLEC4DQ8WXI8 215 aa22.08■■□□□ 1.13
CCDC88B-206ENST00000473405 PDGFCQ9NRA1 345 aa22.08■■□□□ 1.13
CCDC88B-206ENST00000473405 SMPD1P17405 629 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 NT5C2P49902 561 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 EPHB4P54760 987 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 BEX3Q00994 111 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 TMEM63BQ5T3F8 832 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 SLC30A10Q6XR72 485 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 EEPD1Q7L9B9 569 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 TLK2Q86UE8 772 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 TMEM39AQ9NV64 488 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 TBX21Q9UL17 535 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 VCANP13611 3396 aa22.07■■□□□ 1.12
CCDC88B-206ENST00000473405 WDR19Q8NEZ3 1342 aa22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 DCDC2CA8MYV0 355 aa22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 B4E1Z4 1266 aa22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 GOLGA8HP0CJ92 632 aa22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 RAG1P15918 1043 aa22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 ALDH5A1P51649 535 aaPredicted RBP22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 GPATCH4Q5T3I0 446 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 PNMA1Q8ND90 353 aa22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 CPVLQ9H3G5 476 aa22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 VTA1Q9NP79 307 aa22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 MROH7Q68CQ1 1323 aa22.06■■□□□ 1.12
CCDC88B-206ENST00000473405 CHD7Q9P2D1 2997 aa22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 A0A0U1RQG5 324 aaPredicted RBP22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 PTPDC1A2A3K4 754 aa22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 IMMTQ16891 758 aaKnown RBP22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 TTC22Q5TAA0 569 aa22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 FAM109BQ6ICB4 259 aaPredicted RBP22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 NOL8Q76FK4 1167 aaKnown RBP22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 IQCA1Q86XH1 822 aa22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 ENAHQ8N8S7 591 aaPredicted RBP22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 ANKS1AQ92625 1134 aa22.05■■□□□ 1.12
CCDC88B-206ENST00000473405 ARVCFO00192 962 aa22.04■■□□□ 1.12
CCDC88B-206ENST00000473405 FSCN1Q16658 493 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-206ENST00000473405 FAM126BQ8IXS8 530 aa22.04■■□□□ 1.12
CCDC88B-206ENST00000473405 ZSCAN10Q96SZ4 725 aaPredicted RBP22.04■■□□□ 1.12
CCDC88B-206ENST00000473405 ADD3Q9UEY8 706 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-206ENST00000473405 STXBP5LQ9Y2K9 1186 aa22.04■■□□□ 1.12
CCDC88B-206ENST00000473405 TNKSO95271 1327 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms