RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 C12orf42Q96LP6 360 aa10.69□□□□□ -0.7
VPS52-216ENST00000471309 CLIC6Q96NY7 704 aa10.69□□□□□ -0.7
VPS52-216ENST00000471309 PSTPIP2Q9H939 334 aa10.69□□□□□ -0.7
VPS52-216ENST00000471309 TMEM260Q9NX78 707 aa10.69□□□□□ -0.7
VPS52-216ENST00000471309 FAM13BQ9NYF5 915 aa10.69□□□□□ -0.7
VPS52-216ENST00000471309 BIN2Q9UBW5 565 aaPredicted RBP10.69□□□□□ -0.7
VPS52-216ENST00000471309 MRVI1Q9Y6F6 885 aa10.69□□□□□ -0.7
VPS52-216ENST00000471309 LOC285556D6RIA3 1793 aa10.69□□□□□ -0.7
VPS52-216ENST00000471309 CCDC192P0DO97 292 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 VCAM1P19320 739 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 PRPHP41219 470 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 SYKP43405 635 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 GRIN1Q05586 938 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 MTMR2Q13614 643 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 CAMK4Q16566 473 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 JAKMIP3Q5VZ66 844 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 C4orf32Q8N8J7 132 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 ZNF280CQ8ND82 737 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 ZKSCAN4Q969J2 545 aaPredicted RBP10.68□□□□□ -0.7
VPS52-216ENST00000471309 NAP1L4Q99733 375 aaKnown RBP10.68□□□□□ -0.7
VPS52-216ENST00000471309 SLF1Q9BQI6 1058 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 CSRNP2Q9H175 543 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 KCNH3Q9ULD8 1083 aa10.68□□□□□ -0.7
VPS52-216ENST00000471309 ABCB11O95342 1321 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 POLR2AP24928 1970 aaKnown RBP10.67□□□□□ -0.7
VPS52-216ENST00000471309 GOLGB1Q14789 3259 aaKnown RBP10.67□□□□□ -0.7
VPS52-216ENST00000471309 C19orf81C9J6K1 198 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 PIK3CDO00329 1044 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 NEMFO60524 1076 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 USP2O75604 605 aaPredicted RBP10.67□□□□□ -0.7
VPS52-216ENST00000471309 ZNF202O95125 648 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 BACE1P56817 501 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 SNAP25P60880 206 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 SPP2Q13103 211 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 UBE2SQ16763 222 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 LETM2Q2VYF4 491 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 KRT26Q7Z3Y9 468 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 PNMA8AQ86V59 439 aaPredicted RBP10.67□□□□□ -0.7
VPS52-216ENST00000471309 ELOA2Q8IYF1 753 aaPredicted RBP10.67□□□□□ -0.7
VPS52-216ENST00000471309 PRPF38AQ8NAV1 312 aaKnown RBP10.67□□□□□ -0.7
VPS52-216ENST00000471309 KIFC2Q96AC6 838 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 TAF1DQ9H5J8 278 aaPredicted RBP10.67□□□□□ -0.7
VPS52-216ENST00000471309 EMILIN3Q9NT22 766 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 FBXO28Q9NVF7 368 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 SNCAIPQ9Y6H5 919 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 A0A0G2JMZ2 1700 aa10.67□□□□□ -0.7
VPS52-216ENST00000471309 PTPRFP10586 1907 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 VWA3AA6NCI4 1184 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 MEIS2O14770 477 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 OPLAHO14841 1288 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 PPP1R12BO60237 982 aaPredicted RBP10.66□□□□□ -0.7
VPS52-216ENST00000471309 CCNT1O60563 726 aaKnown RBP10.66□□□□□ -0.7
VPS52-216ENST00000471309 FOSP01100 380 aaPredicted RBP10.66□□□□□ -0.7
VPS52-216ENST00000471309 ICAM1P05362 532 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 OR52Z1P0C646 297 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 GCFC2P16383 781 aaKnown RBP10.66□□□□□ -0.7
VPS52-216ENST00000471309 NF2P35240 595 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 LONP1P36776 959 aaKnown RBP10.66□□□□□ -0.7
VPS52-216ENST00000471309 TYRO3Q06418 890 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 VGLL4Q14135 290 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 USH1GQ495M9 461 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 PPP4R3AQ6IN85 833 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 SASS6Q6UVJ0 657 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.66□□□□□ -0.7
VPS52-216ENST00000471309 CKAP2LQ8IYA6 745 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 CDCA5Q96FF9 252 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 PYM1Q9BRP8 204 aaKnown RBP10.66□□□□□ -0.7
VPS52-216ENST00000471309 ANO3Q9BYT9 981 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 TANGO6Q9C0B7 1094 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 RBSNQ9H1K0 784 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 PNMA2Q9UL42 364 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 FZD1Q9UP38 647 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 ZHX2Q9Y6X8 837 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 RLFQ13129 1914 aa10.66□□□□□ -0.7
VPS52-216ENST00000471309 ZNF536O15090 1300 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 MYH7BA7E2Y1 1941 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L15C9J2P7 530 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L13C9JLJ4 530 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L11C9JVI0 530 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L18D6R9N7 530 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L22D6RA61 530 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L17D6RBQ6 530 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L19D6RCP7 530 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L20D6RJB6 530 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 FDX1P10109 184 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 XRCC6P12956 609 aaKnown RBP eCLIP10.65□□□□□ -0.7
VPS52-216ENST00000471309 IREB2P48200 963 aaKnown RBP10.65□□□□□ -0.7
VPS52-216ENST00000471309 MAP3K9P80192 1104 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L24Q0WX57 530 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 IL17AQ16552 155 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 SH3D19Q5HYK7 790 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 SPECC1Q5M775 1068 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 CCDC174Q6PII3 467 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 USP17L6PQ6QN14 398 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 MOXD1Q6UVY6 613 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 DTHD1Q6ZMT9 781 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 KRBA2Q6ZNG9 492 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 RBM46Q8TBY0 533 aaKnown RBP10.65□□□□□ -0.7
VPS52-216ENST00000471309 CRYGNQ8WXF5 182 aa10.65□□□□□ -0.7
VPS52-216ENST00000471309 SYMPKQ92797 1274 aaKnown RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms