RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ADCY6O43306 1168 aa18.14■□□□□ 0.49
SKA3-204ENST00000462482 MFAP1P55081 439 aaKnown RBP18.14■□□□□ 0.49
SKA3-204ENST00000462482 IRX5P78411 483 aaPredicted RBP18.14■□□□□ 0.49
SKA3-204ENST00000462482 BEX3Q00994 111 aa18.14■□□□□ 0.49
SKA3-204ENST00000462482 FSCN1Q16658 493 aaKnown RBP18.14■□□□□ 0.49
SKA3-204ENST00000462482 PSRC1Q6PGN9 363 aaPredicted RBP18.14■□□□□ 0.49
SKA3-204ENST00000462482 MYLIPQ8WY64 445 aa18.14■□□□□ 0.49
SKA3-204ENST00000462482 CRBNQ96SW2 442 aa18.14■□□□□ 0.49
SKA3-204ENST00000462482 MPHOSPH6Q99547 160 aaKnown RBP18.14■□□□□ 0.49
SKA3-204ENST00000462482 KATNBL1Q9H079 304 aa18.14■□□□□ 0.49
SKA3-204ENST00000462482 MTIF3Q9H2K0 278 aaKnown RBP18.14■□□□□ 0.49
SKA3-204ENST00000462482 VTA1Q9NP79 307 aa18.14■□□□□ 0.49
SKA3-204ENST00000462482 SALL3Q9BXA9 1300 aa18.14■□□□□ 0.49
SKA3-204ENST00000462482 COL11A1P12107 1806 aaPredicted RBP18.14■□□□□ 0.49
SKA3-204ENST00000462482 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.13■□□□□ 0.49
SKA3-204ENST00000462482 FOXP2O15409 715 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 NKX3-2P78367 333 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 HDAC1Q13547 482 aaPredicted RBP18.13■□□□□ 0.49
SKA3-204ENST00000462482 MUM1L1Q5H9M0 696 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 SYDE2Q5VT97 1194 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 CXCL17Q6UXB2 119 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 EEPD1Q7L9B9 569 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 FAM126BQ8IXS8 530 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.13■□□□□ 0.496e-14■■■■□ 20.1
SKA3-204ENST00000462482 PPP1R12CQ9BZL4 782 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 TTYH1Q9H313 450 aaPredicted RBP18.13■□□□□ 0.49
SKA3-204ENST00000462482 Q9Y3F1 56 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 LTBP2Q14767 1821 aa18.13■□□□□ 0.49
SKA3-204ENST00000462482 FGAP02671 866 aa18.12■□□□□ 0.49
SKA3-204ENST00000462482 FGRP09769 529 aa18.12■□□□□ 0.49
SKA3-204ENST00000462482 DNAJB2P25686 324 aa18.12■□□□□ 0.49
SKA3-204ENST00000462482 MFSD6Q6ZSS7 791 aa18.12■□□□□ 0.49
SKA3-204ENST00000462482 KIAA1211Q6ZU35 1233 aa18.12■□□□□ 0.49
SKA3-204ENST00000462482 FBXO16Q8IX29 292 aaPredicted RBP18.12■□□□□ 0.49
SKA3-204ENST00000462482 RANBP17Q9H2T7 1088 aaKnown RBP18.12■□□□□ 0.49
SKA3-204ENST00000462482 RNF41Q9H4P4 317 aaPredicted RBP18.12■□□□□ 0.49
SKA3-204ENST00000462482 GPCPD1Q9NPB8 672 aa18.12■□□□□ 0.49
SKA3-204ENST00000462482 TCP11L1Q9NUJ3 509 aa18.12■□□□□ 0.49
SKA3-204ENST00000462482 GNEQ9Y223 722 aaKnown RBP18.12■□□□□ 0.49
SKA3-204ENST00000462482 LOC102724159A0A0B4J2E5 919 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 A0A0D9SFI3 127 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 PTPDC1A2A3K4 754 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 PCP11498 1178 aaKnown RBP18.11■□□□□ 0.49
SKA3-204ENST00000462482 CSF2RAP15509 400 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 SMPD1P17405 629 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 SLC16A2P36021 539 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 NOVP48745 357 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 ITGA7Q13683 1181 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 AAMPQ13685 434 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 PWP2Q15269 919 aaKnown RBP18.11■□□□□ 0.49
SKA3-204ENST00000462482 BTNL9Q6UXG8 535 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 RILPL2Q969X0 211 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 TIFAQ96CG3 184 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 FAM227BQ96M60 508 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 TMEM47Q9BQJ4 181 aa18.11■□□□□ 0.49
SKA3-204ENST00000462482 ZMYM6O95789 1325 aa18.1■□□□□ 0.49
SKA3-204ENST00000462482 FRMPD2Q68DX3 1309 aaPredicted RBP18.1■□□□□ 0.49
SKA3-204ENST00000462482 B4DLN1 442 aa18.1■□□□□ 0.49
SKA3-204ENST00000462482 CTAGE5O15320 804 aa18.1■□□□□ 0.49
SKA3-204ENST00000462482 HSPD1P10809 573 aaKnown RBP18.1■□□□□ 0.49
SKA3-204ENST00000462482 MRPL12P52815 198 aaKnown RBP18.1■□□□□ 0.49
SKA3-204ENST00000462482 NMIQ13287 307 aaPredicted RBP18.1■□□□□ 0.49
SKA3-204ENST00000462482 BAATQ14032 418 aaPredicted RBP18.1■□□□□ 0.49
SKA3-204ENST00000462482 BRDTQ58F21 947 aaPredicted RBP18.1■□□□□ 0.49
SKA3-204ENST00000462482 TMEM240Q5SV17 173 aa18.1■□□□□ 0.49
SKA3-204ENST00000462482 TTBK2Q6IQ55 1244 aa18.1■□□□□ 0.49
SKA3-204ENST00000462482 TTC14Q96N46 770 aa18.1■□□□□ 0.49
SKA3-204ENST00000462482 HIPK3Q9H422 1215 aa18.1■□□□□ 0.49
SKA3-204ENST00000462482 RWDD1Q9H446 243 aaPredicted RBP18.1■□□□□ 0.49
SKA3-204ENST00000462482 PDGFCQ9NRA1 345 aa18.1■□□□□ 0.49
SKA3-204ENST00000462482 ASTN1O14525 1302 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 CCDC171Q6TFL3 1326 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 CD4P01730 458 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 CYP2C18P33260 490 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 HAND2P61296 217 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 AKNAD1Q5T1N1 836 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 TAPT1Q6NXT6 567 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 ZNF365Q70YC5 407 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 RASGRP2Q7LDG7 609 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 SLC43A3Q8NBI5 491 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 ESR2Q92731 530 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 COL25A1Q9BXS0 654 aaPredicted RBP18.09■□□□□ 0.49
SKA3-204ENST00000462482 LNPKQ9C0E8 428 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 ZNF576Q9H609 170 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 IL23AQ9NPF7 189 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 GPHNQ9NQX3 736 aaPredicted RBP18.09■□□□□ 0.49
SKA3-204ENST00000462482 POLR3EQ9NVU0 708 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 MSRAQ9UJ68 235 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 ZNFX1Q9P2E3 1918 aaKnown RBP18.09■□□□□ 0.49
SKA3-204ENST00000462482 PLXNA1Q9UIW2 1896 aa18.09■□□□□ 0.49
SKA3-204ENST00000462482 RAD50Q92878 1312 aa18.08■□□□□ 0.49
SKA3-204ENST00000462482 FGBP02675 491 aa18.08■□□□□ 0.48
SKA3-204ENST00000462482 ACRP10323 421 aa18.08■□□□□ 0.48
SKA3-204ENST00000462482 CALML3P27482 149 aa18.08■□□□□ 0.48
SKA3-204ENST00000462482 CPT1AP50416 773 aa18.08■□□□□ 0.48
SKA3-204ENST00000462482 ALDH5A1P51649 535 aaPredicted RBP18.08■□□□□ 0.48
SKA3-204ENST00000462482 PDE4DQ08499 809 aa18.08■□□□□ 0.48
SKA3-204ENST00000462482 DUSP28Q4G0W2 176 aa18.08■□□□□ 0.48
SKA3-204ENST00000462482 CCDC178Q5BJE1 867 aa18.08■□□□□ 0.48
SKA3-204ENST00000462482 RNF207Q6ZRF8 634 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms