RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 GOLGA6L1Q8N7Z2 621 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 TTC14Q96N46 770 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 GBP4Q96PP9 640 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 CCDC113Q9H0I3 377 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 CPSF2Q9P2I0 782 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 XPO7Q9UIA9 1087 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 SALL4Q9UJQ4 1053 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 METTL12A8MUP2 240 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 FAM25EA8MYX2 175 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 NPHP1O15259 732 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 SRGNP10124 158 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 GPSM2P81274 684 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 ARSHQ5FYA8 562 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 AP1ARQ63HQ0 302 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 WDR75Q8IWA0 830 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 STK11IPQ8N1F8 1099 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 UBR7Q8N806 425 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 CCDC26Q8TAB7 109 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 TBC1D20Q96BZ9 403 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 TBC1D31Q96DN5 1066 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 ORAI2Q96SN7 254 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 BAG1Q99933 345 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 KCNQ5Q9NR82 932 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 HOMER2Q9NSB8 354 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 CHMP5Q9NZZ3 219 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 TBK1Q9UHD2 729 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 TMEM98Q9Y2Y6 226 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 CDC42BPGQ6DT37 1551 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 RGPD8O14715 1765 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 KDM2BQ8NHM5 1336 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 POTECB2RU33 542 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 GJB6O95452 261 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 F13A1P00488 732 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 CNGA1P29973 690 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 RWDD2BP57060 319 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 NNTQ13423 1086 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 PPP2R5EQ16537 467 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 TTC19Q6DKK2 380 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 KRT27Q7Z3Y8 459 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 KRT25Q7Z3Z0 450 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 UNC5CLQ8IV45 518 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 DRAXINQ8NBI3 349 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 THOC1Q96FV9 657 aaKnown RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 PLEKHG4BQ96PX9 1271 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 GSDMAQ96QA5 445 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 TRIM7Q9C029 511 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 RASSF4Q9H2L5 321 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 TOMM22Q9NS69 142 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 ACTR10Q9NZ32 417 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 BARX2Q9UMQ3 279 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 PTCH2Q9Y6C5 1203 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 MORC2Q9Y6X9 1032 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 TECPR2O15040 1411 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 C19orf81C9J6K1 198 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 SASH1O94885 1247 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 ALDH1A1P00352 501 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 GNALP38405 381 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 EIF6P56537 245 aaKnown RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 PDIA5Q14554 519 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 KRT72Q14CN4 511 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 PDCD2Q16342 344 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 SLC5A9Q2M3M2 681 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 ARSJQ5FYB0 599 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 CCDC158Q5M9N0 1113 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 HHATQ5VTY9 493 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 SFMBT2Q5VUG0 894 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 PACS1Q6VY07 963 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 RUFY4Q6ZNE9 571 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 GK5Q6ZS86 529 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 FAM196AQ6ZSG2 479 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 MCM10Q7L590 875 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 LRP10Q7Z4F1 713 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 CDK5RAP3Q96JB5 506 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 FERD3LQ96RJ6 166 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 SLC39A3Q9BRY0 314 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 ABCG4Q9H172 646 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 VPS33BQ9H267 617 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 EXOC1Q9NV70 894 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 C6orf203Q9P0P8 240 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 SPATA7Q9P0W8 599 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 SEL1LQ9UBV2 794 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 CLIP2Q9UDT6 1046 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 EVLQ9UI08 416 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 JRKLQ9Y4A0 524 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 PCDHB5Q9Y5E4 795 aa5.5□□□□□ -1.53
CCDC88A-209ENST00000456975 LRPPRCP42704 1394 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 ABCC11Q96J66 1382 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 NINLQ9Y2I6 1382 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 NPHP3Q7Z494 1330 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 ENC1O14682 589 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 HARSP12081 509 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 POU3F3P20264 500 aaPredicted RBP5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 ATP4AP20648 1035 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 VEGFBP49765 207 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 ZNF157P51786 506 aaPredicted RBP5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 COX10Q12887 443 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 C2orf27AQ580R0 203 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 BRDTQ58F21 947 aaPredicted RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms