RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	TBC1D10C	Q8IV04	446 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	WNT2B	Q93097	391 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	LENG1	Q96BZ8	264 aa	Predicted RBP	10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	IL17RB	Q9NRM6	502 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	ANAPC4	Q9UJX5	808 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	SZT2	Q5T011	3432 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	KBTBD13	C9JR72	458 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	SEPT4	O43236	478 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	ORC4	O43929	436 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	COL6A1	P12109	1028 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	TAL1	P17542	331 aa	Predicted RBP	10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	MFAP1	P55081	439 aa	Known RBP	10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	ZNF792	Q3KQV3	632 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	MFSD6	Q6ZSS7	791 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	ANKRD35	Q8N283	1001 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	TINF2	Q9BSI4	451 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	OSBPL3	Q9H4L5	887 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	SLC38A10	Q9HBR0	1119 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	NEDD4	P46934	1319 aa		10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	FRMPD2	Q68DX3	1309 aa	Predicted RBP	10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	BAZ2B	Q9UIF8	2168 aa	Known RBP	10.24	□□□□□ -0.77
RFX3-209	ENST00000451859	DNM1L	O00429	736 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	IGHA2	P01877	340 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	ALAS1	P13196	640 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	PDE4A	P27815	886 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	SLC16A2	P36021	539 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	AKNAD1	Q5T1N1	836 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	FAM160B2	Q86V87	743 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	ARRDC4	Q8NCT1	418 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	CHURC1	Q8WUH1	139 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	STAG1	Q8WVM7	1258 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	FERMT2	Q96AC1	680 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	GMCL1	Q96IK5	515 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	AGBL1	Q96MI9	1066 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	TMEM47	Q9BQJ4	181 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	ZKSCAN3	Q9BRR0	538 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	GPCPD1	Q9NPB8	672 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	RNF146	Q9NTX7	359 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	ZHX1	Q9UKY1	873 aa	Predicted RBP	10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	SYNPO2	Q9UMS6	1093 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	CNPY2	Q9Y2B0	182 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	ZMYM6	O95789	1325 aa		10.23	□□□□□ -0.77
RFX3-209	ENST00000451859	LAMA2	P24043	3122 aa	Known RBP	10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	ZNF213	O14771	459 aa		10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	PGK1	P00558	417 aa		10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	RARB	P10826	455 aa		10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	TOP1	P11387	765 aa	Known RBP	10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	MAGEA10	P43363	369 aa	Predicted RBP	10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	TTBK2	Q6IQ55	1244 aa		10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	RCSD1	Q6JBY9	416 aa		10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	DCAF4	Q8WV16	495 aa		10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	ACAD9	Q9H845	621 aa		10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	PRR12	Q9ULL5	1215 aa		10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	ATP11B	Q9Y2G3	1177 aa		10.22	□□□□□ -0.77
RFX3-209	ENST00000451859	MYH7B	A7E2Y1	1941 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	LAMA3	Q16787	3333 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	HIP1	O00291	1037 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	ATP2A1	O14983	1001 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	FGR	P09769	529 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	GSPT1	P15170	499 aa	Known RBP	10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	ADCYAP1R1	P41586	468 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	OAZ1	P54368	228 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	RTP1	P59025	263 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	MDM2	Q00987	491 aa	Predicted RBP	10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	CNTN2	Q02246	1040 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	LRRC41	Q15345	812 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	MUM1L1	Q5H9M0	696 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	TTC22	Q5TAA0	569 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	CHST13	Q8NET6	341 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	TRERF1	Q96PN7	1200 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	PRO3102	Q9H379	93 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	RNF41	Q9H4P4	317 aa	Predicted RBP	10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	A1CF	Q9NQ94	594 aa	Known RBP	10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	XPNPEP3	Q9NQH7	507 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	PRDM5	Q9NQX1	630 aa	Predicted RBP	10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	FBXO40	Q9UH90	709 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	CCPG1	Q9ULG6	757 aa		10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	DIS3	Q9Y2L1	958 aa	Known RBP	10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	DDX49	Q9Y6V7	483 aa	Known RBP	10.21	□□□□□ -0.77
RFX3-209	ENST00000451859	ZNF536	O15090	1300 aa		10.21	□□□□□ -0.78
RFX3-209	ENST00000451859	KIAA1217	Q5T5P2	1943 aa		10.21	□□□□□ -0.78
RFX3-209	ENST00000451859	DNAJC25-GNG10	A0A024R161	153 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859		B4E1Z4	1266 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	KDM4A	O75164	1064 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	SNAI1	O95863	264 aa	Predicted RBP	10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	ZNF865	P0CJ78	1059 aa	Predicted RBP	10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	FDX1	P10109	184 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	AKR1A1	P14550	325 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	IMMT	Q16891	758 aa	Known RBP	10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	SYDE2	Q5VT97	1194 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	NSMF	Q6X4W1	530 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	TICAM2	Q86XR7	235 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	ESR2	Q92731	530 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	FGD4	Q96M96	766 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	IL25	Q9H293	177 aa		10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.2	□□□□□ -0.78
RFX3-209	ENST00000451859	SYNGAP1	Q96PV0	1343 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	SYNRG	Q9UMZ2	1314 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	GOLGA8H	P0CJ92	632 aa		10.19	□□□□□ -0.78
RFX3-209	ENST00000451859	PDHB	P11177	359 aa		10.19	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms