RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	MINPP1	Q9UNW1	487 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	LDHC	P07864	332 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	NT5DC1	Q5TFE4	455 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	FAM84B	Q96KN1	310 aa	Predicted RBP	13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	FCER1A	P12319	257 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	EEF1G	P26641	437 aa	Known RBP	13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	KLRK1	P26718	216 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	CDKAL1	Q5VV42	579 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	C8orf74	Q6P047	294 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	TEX11	Q8IYF3	940 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	SNX29	Q8TEQ0	813 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	DUSP10	Q9Y6W6	482 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	KCTD16	Q68DU8	428 aa		13.21	□□□□□ -0.29
MSH6-204	ENST00000445503	BRIP1	Q9BX63	1249 aa		13.21	□□□□□ -0.29
MSH6-204	ENST00000445503	MLXIP	Q9HAP2	919 aa		13.21	□□□□□ -0.29
MSH6-204	ENST00000445503	EBAG9	O00559	213 aa		13.21	□□□□□ -0.29
MSH6-204	ENST00000445503	ATP1A2	P50993	1020 aa		13.21	□□□□□ -0.29
MSH6-204	ENST00000445503	SET	Q01105	290 aa	Predicted RBP	13.21	□□□□□ -0.29
MSH6-204	ENST00000445503	RASSF7	Q02833	373 aa		13.21	□□□□□ -0.29
MSH6-204	ENST00000445503	GUCY2F	P51841	1108 aa		13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	TTC31	Q49AM3	519 aa	Predicted RBP	13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	TPTE2	Q6XPS3	522 aa		13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	SPAG5	Q96R06	1193 aa		13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	POLD4	Q9HCU8	107 aa		13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	ATP8A2	Q9NTI2	1148 aa		13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	SMARCAL1	Q9NZC9	954 aa		13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	PMS1	P54277	932 aa	Known RBP	13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	TXNRD1	Q16881	649 aa		13.21	□□□□□ -0.3
MSH6-204	ENST00000445503	FER1L4	A9Z1Z3	1794 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	GNPAT	O15228	680 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	EIF4A3	P38919	411 aa	Known RBP	13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	VAV2	P52735	878 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	CALCRL	Q16602	461 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	KLHL7	Q8IXQ5	586 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	MED4	Q9NPJ6	270 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	LMO7	Q8WWI1	1683 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	CNTNAP5	Q8WYK1	1306 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	CCT5	P48643	541 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	PRPF4B	Q13523	1007 aa	Known RBP	13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	REXO1	Q8N1G1	1221 aa	Known RBP	13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	EYA3	Q99504	573 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	AFDN	P55196	1824 aa	Known RBP	13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	ZBED6	P86452	979 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	CACNB1	Q02641	598 aa	Predicted RBP	13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	KRT25	Q7Z3Z0	450 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	TSGA10	Q9BZW7	698 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	ANKRD2	Q9GZV1	360 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	L1RE1	Q9UN81	338 aa		13.2	□□□□□ -0.3
MSH6-204	ENST00000445503	LRRIQ3	A6PVS8	624 aa	Predicted RBP	13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	CCNE1	P24864	410 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	GGCX	P38435	758 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	CFAP58	Q5T655	872 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	ANKRD40	Q6AI12	368 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	NEK8	Q86SG6	692 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	ADSSL1	Q8N142	457 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	TBCK	Q8TEA7	893 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	SRP68	Q9UHB9	627 aa	Known RBP	13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	NCK2	O43639	380 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	OPA1	O60313	960 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	ATP2C2	O75185	946 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	RCAN1	P53805	252 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	USP14	P54578	494 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	ARL6IP4	Q66PJ3	421 aa	Known RBP	13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	LACRT	Q9GZZ8	138 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	KANSL2	Q9H9L4	492 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	TUBGCP6	Q96RT7	1819 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	MRC1	P22897	1456 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	HPD	P32754	393 aa	Predicted RBP	13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	GNGT1	P63211	74 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	MST1R	Q04912	1400 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	STK4	Q13043	487 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	LRRC47	Q8N1G4	583 aa	Known RBP	13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	TRIM58	Q8NG06	486 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	RPGR	Q92834	1020 aa	Known RBP	13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	COA7	Q96BR5	231 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	ZNF804B	A4D1E1	1349 aa		13.19	□□□□□ -0.3
MSH6-204	ENST00000445503	GSTO1	P78417	241 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	DHTKD1	Q96HY7	919 aa	Predicted RBP	13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	PIGS	Q96S52	555 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	RIOK1	Q9BRS2	568 aa	Known RBP	13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	MTA3	Q9BTC8	594 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	SELENOO	Q9BVL4	669 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	THAP9	Q9H5L6	903 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	KCNQ2	O43526	872 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	RBM5	P52756	815 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	SF3A3	Q12874	501 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	BCAS4	Q8TDM0	211 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	NSUN4	Q96CB9	384 aa	Known RBP	13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	NOX5	Q96PH1	765 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	SAMM50	Q9Y512	469 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	FAM205A	Q6ZU69	1335 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	PLEK	P08567	350 aa	Predicted RBP	13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	LIG3	P49916	1009 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms