RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 ZNF579Q8NAF0 562 aaKnown RBP9.61□□□□□ -0.87
HPS4-206ENST00000439453 FAM76AQ8TAV0 307 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 KAT2BQ92831 832 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 ABHD10Q9NUJ1 306 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 DPY19L2Q6NUT2 758 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 TRPM4Q8TD43 1214 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 LPIN2Q92539 896 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 CRACR2AQ9BSW2 395 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 SLC26A6Q9BXS9 759 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 KAT14Q9H8E8 782 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 GJA3Q9Y6H8 435 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 GOLGA8AA7E2F4 631 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 EBAG9O00559 213 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 GPAA1O43292 621 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 SSRP1Q08945 709 aaKnown RBP9.6□□□□□ -0.87
HPS4-206ENST00000439453 USP49Q70CQ1 688 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 GDAP1L1Q96MZ0 367 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 FAM217BQ9NTX9 383 aaPredicted RBP9.6□□□□□ -0.87
HPS4-206ENST00000439453 GUCA1BQ9UMX6 200 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 FAM169AQ9Y6X4 670 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 OTOFQ9HC10 1997 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 TARSL2A2RTX5 802 aaKnown RBP9.6□□□□□ -0.87
HPS4-206ENST00000439453 USP17L3A6NCW0 530 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 USP17L4A6NCW7 530 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 IRAK1P51617 712 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 ZNF280AP59817 542 aaPredicted RBP9.6□□□□□ -0.87
HPS4-206ENST00000439453 SAFBQ15424 915 aaKnown RBP eCLIP9.6□□□□□ -0.87
HPS4-206ENST00000439453 STRIP1Q5VSL9 837 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 NFXL1Q6ZNB6 911 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 USP17L1Q7RTZ2 530 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 TBC1D10CQ8IV04 446 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 MMS19Q96T76 1030 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 HDAC6Q9UBN7 1215 aa9.6□□□□□ -0.87
HPS4-206ENST00000439453 SRPRBQ9Y5M8 271 aaKnown RBP9.6□□□□□ -0.87
HPS4-206ENST00000439453 RNF225M0QZC1 329 aaPredicted RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 AGPSO00116 658 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 VEGFAP15692 232 aaPredicted RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 CDC25AP30304 524 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 CCT6AP40227 531 aaKnown RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 PHKA1P46020 1223 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 MMP14P50281 582 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 GSCP56915 257 aaPredicted RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 DIS3L2Q8IYB7 885 aaKnown RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 ZBED3Q96IU2 234 aaPredicted RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 NUP88Q99567 741 aaPredicted RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 MYL10Q9BUA6 226 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 PCDHB6Q9Y5E3 794 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 STK36Q9NRP7 1315 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 GOLGA6CA6NDK9 693 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 ENC1O14682 589 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 MMP1P03956 469 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 GOLGA6DP0CG33 693 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 AFMP43652 599 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 RILPL1Q5EBL4 403 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 CSRNP2Q9H175 543 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 GOLGA6AQ9NYA3 693 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 TRIM10Q9UDY6 481 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 DDX60LQ5H9U9 1706 aaKnown RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 PPP1R3GB7ZBB8 358 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 ZMYND10O75800 440 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 HNRNPH1P31943 449 aaKnown RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 EPHX2P34913 555 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 TNIP1Q15025 636 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 ZNF804AQ7Z570 1209 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 SMYD4Q8IYR2 804 aaPredicted RBP9.59□□□□□ -0.87
HPS4-206ENST00000439453 SELENOOQ9BVL4 669 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 HACL1Q9UJ83 578 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 KCNJ14Q9UNX9 436 aa9.59□□□□□ -0.87
HPS4-206ENST00000439453 SIPA1L1O43166 1804 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 ASTN2O75129 1339 aaPredicted RBP9.58□□□□□ -0.88
HPS4-206ENST00000439453 B4E1Z4 1266 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 N4BP3O15049 544 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 FMNL1O95466 1100 aaPredicted RBP9.58□□□□□ -0.88
HPS4-206ENST00000439453 HIBADHP31937 336 aaKnown RBP9.58□□□□□ -0.88
HPS4-206ENST00000439453 FKBP1AP62942 108 aaKnown RBP9.58□□□□□ -0.88
HPS4-206ENST00000439453 PPFIA1Q13136 1202 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 MICALL2Q8IY33 904 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 AGBL3Q8NEM8 1001 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 WASF1Q92558 559 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 TMEM87BQ96K49 555 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 CEP126Q9P2H0 1117 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 PGAP2Q9UHJ9 254 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 JAG2Q9Y219 1238 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 REXO2Q9Y3B8 237 aaKnown RBP9.58□□□□□ -0.88
HPS4-206ENST00000439453 PCDHAC2Q9Y5I4 1007 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 SAR1BQ9Y6B6 198 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 EPN1Q9Y6I3 576 aaPredicted RBP9.58□□□□□ -0.88
HPS4-206ENST00000439453 RPS12P25398 132 aaKnown RBP9.58□□□□□ -0.88
HPS4-206ENST00000439453 CASP1P29466 404 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 ZAP70P43403 619 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 GTF2IP78347 998 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 SCARF1Q14162 830 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 KRT31Q15323 416 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 GSPT2Q8IYD1 628 aaKnown RBP9.58□□□□□ -0.88
HPS4-206ENST00000439453 IGDCC4Q8TDY8 1250 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 XAGE2Q96GT9 111 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 SRGAP2O75044 1071 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 NDUFA10O95299 355 aa9.58□□□□□ -0.88
HPS4-206ENST00000439453 ATP1A1P05023 1023 aaKnown RBP9.58□□□□□ -0.88
HPS4-206ENST00000439453 GUCY1A2P33402 732 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms