RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 TXLNBQ8N3L3 684 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 MB21D1Q8N884 522 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 DNAJC7Q99615 494 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 THAP9Q9H5L6 903 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 MAPK8IP1Q9UQF2 711 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 CTAGE15A4D2H0 777 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 TRIM49BA6NDI0 452 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 ZBTB22O15209 634 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 KLRC4O43908 158 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 ERLIN1O75477 346 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 NDUFA10O95299 355 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 CTAGE8P0CG41 777 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 EEF1GP26641 437 aaKnown RBP18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 TYW1BQ6NUM6 668 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 CTAGE6Q86UF2 777 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 CTAGE4Q8IX94 777 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 ZNF507Q8TCN5 953 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 CD209Q9NNX6 404 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 IL17RBQ9NRM6 502 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 EPN1Q9Y6I3 576 aaPredicted RBP18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 ROBO3Q96MS0 1386 aa18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 TTC26A0AVF1 554 aa18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 TFRCP02786 760 aaKnown RBP18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 DTHD1Q6ZMT9 781 aa18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 HDXQ7Z353 690 aa18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 PNMA1Q8ND90 353 aa18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 RASGRP4Q8TDF6 673 aa18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 CHP1Q99653 195 aa18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 CCSER1Q9C0I3 900 aa18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 SLX4Q8IY92 1834 aa18.4■□□□□ 0.54
CLCNKA-203ENST00000439316 CCDC194A0A1B0GVG4 234 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 RHOBTB3O94955 611 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 GNAQP50148 359 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 PMS1P54277 932 aaKnown RBP18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 STYK1Q6J9G0 422 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 OR8K1Q8NGG5 319 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 TMEM60Q9H2L4 133 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 KBTBD4Q9NVX7 518 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 MCM9Q9NXL9 1143 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 PCDHA6Q9UN73 950 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 PCDHA8Q9Y5H6 950 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 USP17L8P0C7I0 530 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 TFAP4Q01664 338 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 GPS2Q13227 327 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 SLC35G1Q2M3R5 365 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 C12orf60Q5U649 245 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 GALNT17Q6IS24 598 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 STAG2Q8N3U4 1231 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 GIMAP8Q8ND71 665 aaPredicted RBP18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 CCDC148Q8NFR7 591 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 NEK11Q8NG66 645 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 SLC16A10Q8TF71 515 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 TMX4Q9H1E5 349 aaPredicted RBP18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 MKRN1Q9UHC7 482 aaKnown RBP18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 MAD2L2Q9UI95 211 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 MYO6Q9UM54 1294 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 CAPN11Q9UMQ6 739 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 L1RE1Q9UN81 338 aa18.39■□□□□ 0.53
CLCNKA-203ENST00000439316 PP2D1A8MPX8 630 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 PSMD14O00487 310 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 RIMBP2O15034 1052 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 TUBBP07437 444 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 DPP8Q6V1X1 898 aaPredicted RBP18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 WDR66Q8TBY9 1149 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 NOC3LQ8WTT2 800 aaKnown RBP18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 EXOC4Q96A65 974 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 HAUS4Q9H6D7 363 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 ABCB6Q9NP58 842 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 PSD3Q9NYI0 1048 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 MYH1P12882 1939 aa18.38■□□□□ 0.53
CLCNKA-203ENST00000439316 LAD1O00515 517 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 PSMA7O14818 248 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 IL1R1P14778 569 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 PRPHP41219 470 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 HNRNPH2P55795 449 aaKnown RBP18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 VSNL1P62760 191 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 STIM1Q13586 685 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 TTI2Q6NXR4 508 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 GBP3Q9H0R5 595 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 LUC7L2Q9Y383 392 aaKnown RBP18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 STXBP3O00186 592 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 RHOXF2BP0C7M4 288 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 MEA1Q16626 185 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 CCDC178Q5BJE1 867 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 ZNF662Q6ZS27 426 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 TRAPPC11Q7Z392 1133 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 TRIM47Q96LD4 638 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 RHOXF2Q9BQY4 288 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 MAGEF1Q9HAY2 307 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 TRIM10Q9UDY6 481 aa18.37■□□□□ 0.53
CLCNKA-203ENST00000439316 UBA7P41226 1012 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 HERVK_113P62684 666 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 INF2Q27J81 1249 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 MUM1L1Q5H9M0 696 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 SPTY2D1Q68D10 685 aaPredicted RBP18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 WDR59Q6PJI9 974 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 DZIP1Q86YF9 867 aaKnown RBP18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 NOA1Q8NC60 698 aaKnown RBP18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 RASSF8Q8NHQ8 419 aa18.36■□□□□ 0.53
CLCNKA-203ENST00000439316 LRRC15Q8TF66 581 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms