RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CA12O43570 354 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 STX6O43752 255 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 CYP2C8P10632 490 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 KRT2P35908 639 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 VEGFBP49765 207 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 SNAP25P60880 206 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 MOGSQ13724 837 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 ARHGEF6Q15052 776 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 POTEHQ6S545 545 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 NCAPG2Q86XI2 1143 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 CHST13Q8NET6 341 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 GPKOWQ92917 476 aaPredicted RBP eCLIP11.59□□□□□ -0.55
CD44-207ENST00000425428 COA7Q96BR5 231 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 TRERF1Q96PN7 1200 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 SPATC1LQ9H0A9 340 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 ACAD9Q9H845 621 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 MAP3K20Q9NYL2 800 aaKnown RBP11.59□□□□□ -0.55
CD44-207ENST00000425428 VPS54Q9P1Q0 977 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 ADAMTS5Q9UNA0 930 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 SPDYE3A6NKU9 549 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 B4DLN1 442 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 AOC2O75106 756 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 ERVK-9P63128 1117 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 ERVK-24P63145 666 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 ST3GAL1Q11201 340 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 WWC2Q6AWC2 1192 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 RIOX2Q8IUF8 465 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 ANKRD13CQ8N6S4 541 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 FBXO18Q8NFZ0 1043 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 MROH8Q9H579 483 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 HOMER2Q9NSB8 354 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 RNF146Q9NTX7 359 aa11.59□□□□□ -0.55
CD44-207ENST00000425428 RLFQ13129 1914 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 CCDC194A0A1B0GVG4 234 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 ESYT2A0FGR8 921 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 GCOM1H8Y6P7 765 aaPredicted RBP11.58□□□□□ -0.56
CD44-207ENST00000425428 STXBP3O00186 592 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 IGF2BP3O00425 579 aaKnown RBP eCLIP11.58□□□□□ -0.56
CD44-207ENST00000425428 TLR2O60603 784 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 POLR2MP0CAP2 368 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 FDPSP14324 419 aaKnown RBP11.58□□□□□ -0.56
CD44-207ENST00000425428 SYT1P21579 422 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 KCTD2Q14681 263 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 TMEM132BQ14DG7 1078 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 PKN1Q16512 942 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 FAM110CQ1W6H9 321 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 KRT40Q6A162 431 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 REXO1Q8N1G1 1221 aaKnown RBP11.58□□□□□ -0.56
CD44-207ENST00000425428 ANKRD35Q8N283 1001 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 AGBL1Q96MI9 1066 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 PTPN18Q99952 460 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 ZSCAN16Q9H4T2 348 aaPredicted RBP11.58□□□□□ -0.56
CD44-207ENST00000425428 SLC5A4Q9NY91 659 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 CHMP5Q9NZZ3 219 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 NOL7Q9UMY1 257 aaKnown RBP11.58□□□□□ -0.56
CD44-207ENST00000425428 PCDHA4Q9UN74 947 aa11.58□□□□□ -0.56
CD44-207ENST00000425428 CFBP00751 764 aa11.57□□□□□ -0.56
CD44-207ENST00000425428 FOSP01100 380 aaPredicted RBP11.57□□□□□ -0.56
CD44-207ENST00000425428 MMP1P03956 469 aa11.57□□□□□ -0.56
CD44-207ENST00000425428 MAPK4P31152 587 aa11.57□□□□□ -0.56
CD44-207ENST00000425428 GUCY1B3Q02153 619 aa11.57□□□□□ -0.56
CD44-207ENST00000425428 BLIDQ8IZY5 108 aa11.57□□□□□ -0.56
CD44-207ENST00000425428 SHCBP1Q8NEM2 672 aa11.57□□□□□ -0.56
CD44-207ENST00000425428 ZMYND12Q9H0C1 365 aa11.57□□□□□ -0.56
CD44-207ENST00000425428 RIC8AQ9NPQ8 531 aa11.57□□□□□ -0.56
CD44-207ENST00000425428 PFASO15067 1338 aa11.57□□□□□ -0.56
CD44-207ENST00000425428 STRNO43815 780 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 FCER1AP12319 257 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 NSMFQ6X4W1 530 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 RNF207Q6ZRF8 634 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 BRAPQ7Z569 592 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 PHF20Q9BVI0 1012 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 FOXP1Q9H334 677 aaPredicted RBP11.56□□□□□ -0.56
CD44-207ENST00000425428 MORF4L1Q9UBU8 362 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 ZNF214Q9UL59 606 aaPredicted RBP11.56□□□□□ -0.56
CD44-207ENST00000425428 KCNJ14Q9UNX9 436 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 RBBP6Q7Z6E9 1792 aaKnown RBP11.56□□□□□ -0.56
CD44-207ENST00000425428 CRHR2Q13324 411 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 AP3B2Q13367 1082 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 KRT25Q7Z3Z0 450 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 DIS3L2Q8IYB7 885 aaKnown RBP11.56□□□□□ -0.56
CD44-207ENST00000425428 AIFM3Q96NN9 605 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 MMP19Q99542 508 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 NAP1L4Q99733 375 aaKnown RBP11.56□□□□□ -0.56
CD44-207ENST00000425428 BTBD7Q9P203 1132 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 RBPJLQ9UBG7 517 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 ADD3Q9UEY8 706 aaKnown RBP11.56□□□□□ -0.56
CD44-207ENST00000425428 CPA4Q9UI42 421 aa11.56□□□□□ -0.56
CD44-207ENST00000425428 A0A0G2JMZ2 1700 aa11.55□□□□□ -0.56
CD44-207ENST00000425428 ZSCAN22P10073 491 aaPredicted RBP11.55□□□□□ -0.56
CD44-207ENST00000425428 ERCC3P19447 782 aa11.55□□□□□ -0.56
CD44-207ENST00000425428 HTRA3P83110 453 aa11.55□□□□□ -0.56
CD44-207ENST00000425428 SLC35G1Q2M3R5 365 aa11.55□□□□□ -0.56
CD44-207ENST00000425428 DAGLBQ8NCG7 672 aa11.55□□□□□ -0.56
CD44-207ENST00000425428 MOV10L1Q9BXT6 1211 aaKnown RBP11.55□□□□□ -0.56
CD44-207ENST00000425428 SAGE1Q9NXZ1 904 aa11.55□□□□□ -0.56
CD44-207ENST00000425428 TRPA1O75762 1119 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 HOXD10P28358 340 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 NONOQ15233 471 aaKnown RBP eCLIP11.54□□□□□ -0.56
CD44-207ENST00000425428 REPS2Q8NFH8 660 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms