RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 TMEM39AQ9NV64 488 aa15.35■□□□□ 0.05
VRK3-203ENST00000424804 TKFCQ3LXA3 575 aa15.34■□□□□ 0.05
VRK3-203ENST00000424804 TAPT1Q6NXT6 567 aa15.34■□□□□ 0.05
VRK3-203ENST00000424804 ZNF589Q86UQ0 364 aaPredicted RBP15.34■□□□□ 0.05
VRK3-203ENST00000424804 SLC43A3Q8NBI5 491 aa15.34■□□□□ 0.05
VRK3-203ENST00000424804 MORC4Q8TE76 937 aa15.34■□□□□ 0.05
VRK3-203ENST00000424804 NUP133Q8WUM0 1156 aa15.34■□□□□ 0.05
VRK3-203ENST00000424804 PDGFCQ9NRA1 345 aa15.34■□□□□ 0.05
VRK3-203ENST00000424804 CYP39A1Q9NYL5 469 aa15.34■□□□□ 0.05
VRK3-203ENST00000424804 STX8Q9UNK0 236 aa15.34■□□□□ 0.05
VRK3-203ENST00000424804 CTDP1Q9Y5B0 961 aaPredicted RBP15.34■□□□□ 0.05
VRK3-203ENST00000424804 GRIN2DO15399 1336 aa15.34■□□□□ 0.05
VRK3-203ENST00000424804 TSPY2A6NKD2 308 aa15.33■□□□□ 0.04
VRK3-203ENST00000424804 ARVCFO00192 962 aa15.33■□□□□ 0.04
VRK3-203ENST00000424804 TIMP1P01033 207 aa15.33■□□□□ 0.04
VRK3-203ENST00000424804 CD4P01730 458 aa15.33■□□□□ 0.04
VRK3-203ENST00000424804 C6orf222P0C671 652 aaPredicted RBP15.33■□□□□ 0.04
VRK3-203ENST00000424804 HSPD1P10809 573 aaKnown RBP15.33■□□□□ 0.04
VRK3-203ENST00000424804 RAG1P15918 1043 aa15.33■□□□□ 0.04
VRK3-203ENST00000424804 BEX3Q00994 111 aa15.33■□□□□ 0.04
VRK3-203ENST00000424804 CCDC174Q6PII3 467 aa15.33■□□□□ 0.04
VRK3-203ENST00000424804 TMEM47Q9BQJ4 181 aa15.33■□□□□ 0.04
VRK3-203ENST00000424804 RANBP17Q9H2T7 1088 aaKnown RBP15.33■□□□□ 0.04
VRK3-203ENST00000424804 TCP11L1Q9NUJ3 509 aa15.33■□□□□ 0.04
VRK3-203ENST00000424804 DCDC2CA8MYV0 355 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 RANBP6O60518 1105 aaKnown RBP15.32■□□□□ 0.04
VRK3-203ENST00000424804 ALAS1P13196 640 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 SMPD1P17405 629 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 SLC16A2P36021 539 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 FPGSQ05932 587 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 MCMDC2Q4G0Z9 681 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 GNASQ5JWF2 1037 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 ZNF697Q5TEC3 545 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 RASIP1Q5U651 963 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 TICAM2Q86XR7 235 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 FAM126BQ8IXS8 530 aa15.32■□□□□ 0.04
VRK3-203ENST00000424804 PCSK9Q8NBP7 692 aaKnown RBP15.32■□□□□ 0.04
VRK3-203ENST00000424804 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.32■□□□□ 0.048e-11■■■■□ 20.6
VRK3-203ENST00000424804 CHD9Q3L8U1 2897 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 PDE4AP27815 886 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 TNFAIP2Q03169 654 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 NMIQ13287 307 aaPredicted RBP15.31■□□□□ 0.04
VRK3-203ENST00000424804 PPP4R3BQ5MIZ7 849 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 TMEM240Q5SV17 173 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 MFSD5Q6N075 450 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 DCAF4Q8WV16 495 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 VWCEQ96DN2 955 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 GLT1D1Q96MS3 346 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 ZMYM6O95789 1325 aa15.31■□□□□ 0.04
VRK3-203ENST00000424804 A0A0U1RQG5 324 aaPredicted RBP15.3■□□□□ 0.04
VRK3-203ENST00000424804 ASB14A6NK59 587 aa15.3■□□□□ 0.04
VRK3-203ENST00000424804 ICAM1P05362 532 aa15.3■□□□□ 0.04
VRK3-203ENST00000424804 CLEC4DQ8WXI8 215 aa15.3■□□□□ 0.04
VRK3-203ENST00000424804 MYLIPQ8WY64 445 aa15.3■□□□□ 0.04
VRK3-203ENST00000424804 RNPC3Q96LT9 517 aaKnown RBP15.3■□□□□ 0.04
VRK3-203ENST00000424804 OSBPL3Q9H4L5 887 aa15.3■□□□□ 0.04
VRK3-203ENST00000424804 NFIBO00712 420 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 NEFLP07196 543 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 SNHG28P0DPA3 235 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 TOP1P11387 765 aaKnown RBP15.29■□□□□ 0.04
VRK3-203ENST00000424804 IKQ13123 557 aaPredicted RBP15.29■□□□□ 0.04
VRK3-203ENST00000424804 IQSEC1Q6DN90 963 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 CXCL17Q6UXB2 119 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 TBC1D10CQ8IV04 446 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 COL25A1Q9BXS0 654 aaPredicted RBP15.29■□□□□ 0.04
VRK3-203ENST00000424804 DIAPH3Q9NSV4 1193 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 CCPG1Q9ULG6 757 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 MTMR7Q9Y216 660 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 MYO9BQ13459 2157 aa15.29■□□□□ 0.04
VRK3-203ENST00000424804 UMODL1Q5DID0 1318 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 MROH7Q68CQ1 1323 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 FRMPD2Q68DX3 1309 aaPredicted RBP15.28■□□□□ 0.04
VRK3-203ENST00000424804 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.28■□□□□ 0.04
VRK3-203ENST00000424804 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.28■□□□□ 0.04
VRK3-203ENST00000424804 RBM47A0AV96 593 aaKnown RBP15.28■□□□□ 0.04
VRK3-203ENST00000424804 DYNC1LI2O43237 492 aaPredicted RBP15.28■□□□□ 0.04
VRK3-203ENST00000424804 PDHBP11177 359 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 CSF2RAP15509 400 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 SDSP20132 328 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 HAND2P61296 217 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 BAATQ14032 418 aaPredicted RBP15.28■□□□□ 0.04
VRK3-203ENST00000424804 SYDE2Q5VT97 1194 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 EEPD1Q7L9B9 569 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 TLK2Q86UE8 772 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.28■□□□□ 0.04
VRK3-203ENST00000424804 FBXO16Q8IX29 292 aaPredicted RBP15.28■□□□□ 0.04
VRK3-203ENST00000424804 SPC25Q9HBM1 224 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 ISY1Q9ULR0 285 aaKnown RBP15.28■□□□□ 0.04
VRK3-203ENST00000424804 Q9Y3F1 56 aa15.28■□□□□ 0.04
VRK3-203ENST00000424804 CCDC171Q6TFL3 1326 aa15.27■□□□□ 0.04
VRK3-203ENST00000424804 TMEM265A0A087WTH1 108 aa15.27■□□□□ 0.04
VRK3-203ENST00000424804 GRXCR1A8MXD5 290 aa15.27■□□□□ 0.04
VRK3-203ENST00000424804 GRIN2CQ14957 1233 aa15.27■□□□□ 0.04
VRK3-203ENST00000424804 FSCN1Q16658 493 aaKnown RBP15.27■□□□□ 0.04
VRK3-203ENST00000424804 RRP12Q5JTH9 1297 aaKnown RBP15.27■□□□□ 0.04
VRK3-203ENST00000424804 AKNAD1Q5T1N1 836 aa15.27■□□□□ 0.04
VRK3-203ENST00000424804 CWC27Q6UX04 472 aaKnown RBP15.27■□□□□ 0.04
VRK3-203ENST00000424804 NSMFQ6X4W1 530 aa15.27■□□□□ 0.04
VRK3-203ENST00000424804 TTC14Q96N46 770 aa15.27■□□□□ 0.04
VRK3-203ENST00000424804 GPCPD1Q9NPB8 672 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms