RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 CDH23Q9H251 3354 aa17.52■□□□□ 0.4
RPS28-201ENST00000417088 HDAC1Q13547 482 aaPredicted RBP17.52■□□□□ 0.4
RPS28-201ENST00000417088 MFSD5Q6N075 450 aa17.52■□□□□ 0.4
RPS28-201ENST00000417088 FAM126BQ8IXS8 530 aa17.52■□□□□ 0.4
RPS28-201ENST00000417088 MYLIPQ8WY64 445 aa17.52■□□□□ 0.4
RPS28-201ENST00000417088 FAM227BQ96M60 508 aa17.52■□□□□ 0.4
RPS28-201ENST00000417088 GNEQ9Y223 722 aaKnown RBP17.52■□□□□ 0.4
RPS28-201ENST00000417088 TMEM265A0A087WTH1 108 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 A0A0D9SFI3 127 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.51■□□□□ 0.39
RPS28-201ENST00000417088 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.51■□□□□ 0.39
RPS28-201ENST00000417088 FGAP02671 866 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 PTGS1P23219 599 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 CCDC96Q2M329 555 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 TTBK2Q6IQ55 1244 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 CXCL17Q6UXB2 119 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 NOL8Q76FK4 1167 aaKnown RBP17.51■□□□□ 0.39
RPS28-201ENST00000417088 C16orf59Q7L2K0 433 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 DCAF4Q8WV16 495 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.51■□□□□ 0.393e-13■■■□□ 14.8
RPS28-201ENST00000417088 PDGFCQ9NRA1 345 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 CCPG1Q9ULG6 757 aa17.51■□□□□ 0.39
RPS28-201ENST00000417088 ICAM1P05362 532 aa17.5■□□□□ 0.39
RPS28-201ENST00000417088 SMPD1P17405 629 aa17.5■□□□□ 0.39
RPS28-201ENST00000417088 SLC16A2P36021 539 aa17.5■□□□□ 0.39
RPS28-201ENST00000417088 PPIGQ13427 754 aaKnown RBP eCLIP17.5■□□□□ 0.39
RPS28-201ENST00000417088 MCMDC2Q4G0Z9 681 aa17.5■□□□□ 0.39
RPS28-201ENST00000417088 TAPT1Q6NXT6 567 aa17.5■□□□□ 0.39
RPS28-201ENST00000417088 BTNL9Q6UXG8 535 aa17.5■□□□□ 0.39
RPS28-201ENST00000417088 NSMFQ6X4W1 530 aa17.5■□□□□ 0.39
RPS28-201ENST00000417088 TLK2Q86UE8 772 aa17.5■□□□□ 0.39
RPS28-201ENST00000417088 MAFAQ8NHW3 353 aaPredicted RBP17.5■□□□□ 0.39
RPS28-201ENST00000417088 PURBQ96QR8 312 aaKnown RBP17.5■□□□□ 0.39
RPS28-201ENST00000417088 COL25A1Q9BXS0 654 aaPredicted RBP17.5■□□□□ 0.39
RPS28-201ENST00000417088 RANBP17Q9H2T7 1088 aaKnown RBP17.5■□□□□ 0.39
RPS28-201ENST00000417088 TOMM22Q9NS69 142 aa17.5■□□□□ 0.39
RPS28-201ENST00000417088 EYSQ5T1H1 3165 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 TLR3O15455 904 aaKnown RBP17.49■□□□□ 0.39
RPS28-201ENST00000417088 DYNC1LI2O43237 492 aaPredicted RBP17.49■□□□□ 0.39
RPS28-201ENST00000417088 CD4P01730 458 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 HSPD1P10809 573 aaKnown RBP17.49■□□□□ 0.39
RPS28-201ENST00000417088 TOP1P11387 765 aaKnown RBP17.49■□□□□ 0.39
RPS28-201ENST00000417088 CSF2RAP15509 400 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 RRP12Q5JTH9 1297 aaKnown RBP17.49■□□□□ 0.39
RPS28-201ENST00000417088 TMEM240Q5SV17 173 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 TMEM63BQ5T3F8 832 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 IQSEC1Q6DN90 963 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 EEPD1Q7L9B9 569 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 ZNF589Q86UQ0 364 aaPredicted RBP17.49■□□□□ 0.39
RPS28-201ENST00000417088 FBXO16Q8IX29 292 aaPredicted RBP17.49■□□□□ 0.39
RPS28-201ENST00000417088 SLC43A3Q8NBI5 491 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 MORC4Q8TE76 937 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 TMEM47Q9BQJ4 181 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 PPP1R12CQ9BZL4 782 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 AP5M1Q9H0R1 490 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 TCP11L1Q9NUJ3 509 aa17.49■□□□□ 0.39
RPS28-201ENST00000417088 CABYRO75952 493 aa17.48■□□□□ 0.39
RPS28-201ENST00000417088 DNAJB2P25686 324 aa17.48■□□□□ 0.39
RPS28-201ENST00000417088 NMIQ13287 307 aaPredicted RBP17.48■□□□□ 0.39
RPS28-201ENST00000417088 FSCN1Q16658 493 aaKnown RBP17.48■□□□□ 0.39
RPS28-201ENST00000417088 SYDE2Q5VT97 1194 aa17.48■□□□□ 0.39
RPS28-201ENST00000417088 TICAM2Q86XR7 235 aa17.48■□□□□ 0.39
RPS28-201ENST00000417088 TMEM199Q8N511 208 aa17.48■□□□□ 0.39
RPS28-201ENST00000417088 GPCPD1Q9NPB8 672 aa17.48■□□□□ 0.39
RPS28-201ENST00000417088 GRIN2DO15399 1336 aa17.47■□□□□ 0.39
RPS28-201ENST00000417088 FRMPD2Q68DX3 1309 aaPredicted RBP17.47■□□□□ 0.39
RPS28-201ENST00000417088 FOSL2P15408 326 aa17.47■□□□□ 0.39
RPS28-201ENST00000417088 ITGA7Q13683 1181 aa17.47■□□□□ 0.39
RPS28-201ENST00000417088 BAATQ14032 418 aaPredicted RBP17.47■□□□□ 0.39
RPS28-201ENST00000417088 RASIP1Q5U651 963 aa17.47■□□□□ 0.39
RPS28-201ENST00000417088 VTA1Q9NP79 307 aa17.47■□□□□ 0.39
RPS28-201ENST00000417088 Q9Y3F1 56 aa17.47■□□□□ 0.39
RPS28-201ENST00000417088 LRRC37A2A6NM11 1700 aa17.47■□□□□ 0.39
RPS28-201ENST00000417088 ZMYM6O95789 1325 aa17.47■□□□□ 0.39
RPS28-201ENST00000417088 NFIBO00712 420 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 ZEB2O60315 1214 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 ACRP10323 421 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 PDHBP11177 359 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 CYP2C18P33260 490 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 HAND2P61296 217 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 GRIN2CQ14957 1233 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 KIAA1211Q6ZU35 1233 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 ZNF365Q70YC5 407 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 LNPKQ9C0E8 428 aa17.46■□□□□ 0.39
RPS28-201ENST00000417088 ADD3Q9UEY8 706 aaKnown RBP17.46■□□□□ 0.39
RPS28-201ENST00000417088 PRUNE2Q8WUY3 3088 aa17.46■□□□□ 0.38
RPS28-201ENST00000417088 CCDC171Q6TFL3 1326 aa17.46■□□□□ 0.38
RPS28-201ENST00000417088 LCTP09848 1927 aa17.45■□□□□ 0.38
RPS28-201ENST00000417088 GRXCR1A8MXD5 290 aa17.45■□□□□ 0.38
RPS28-201ENST00000417088 ALDH5A1P51649 535 aaPredicted RBP17.45■□□□□ 0.38
RPS28-201ENST00000417088 CLEC4DQ8WXI8 215 aa17.45■□□□□ 0.38
RPS28-201ENST00000417088 TIFAQ96CG3 184 aa17.45■□□□□ 0.38
RPS28-201ENST00000417088 TTC14Q96N46 770 aa17.45■□□□□ 0.38
RPS28-201ENST00000417088 IL23AQ9NPF7 189 aa17.45■□□□□ 0.38
RPS28-201ENST00000417088 VCANP13611 3396 aa17.45■□□□□ 0.38
RPS28-201ENST00000417088 TRIM6-TRIM34B2RNG4 842 aa17.44■□□□□ 0.38
RPS28-201ENST00000417088 PSMC6P62333 389 aa17.44■□□□□ 0.38
RPS28-201ENST00000417088 ZNF543Q08ER8 600 aa17.44■□□□□ 0.38
RPS28-201ENST00000417088 DUSP28Q4G0W2 176 aa17.44■□□□□ 0.38
RPS28-201ENST00000417088 AKNAD1Q5T1N1 836 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms