RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 SPAG7O75391 227 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 PSMA3P25788 255 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 KCNJ12Q14500 433 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 NOP9Q86U38 636 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 TRIML2Q8N7C3 387 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 BCAS4Q8TDM0 211 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 ING2Q9H160 280 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 ST7Q9NRC1 585 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 SESN1Q9Y6P5 492 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 MSH6P52701 1360 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 IFT140Q96RY7 1462 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 LIG4P49917 911 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 TSTA3Q13630 321 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 THOC5Q13769 683 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 GALNT17Q6IS24 598 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 NUDCD1Q96RS6 583 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 ARHGAP10A1A4S6 786 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 TMOD1P28289 359 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 EIF3BP55884 814 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 ZC3H12BQ5HYM0 836 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 REXO1Q8N1G1 1221 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 PKD2L1Q9P0L9 805 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 STK17AQ9UEE5 414 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 LRWD1Q9UFC0 647 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 SUN2Q9UH99 717 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 TRPA1O75762 1119 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 PDE6BP35913 854 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 ARHGAP18Q8N392 663 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 U2AF1L4Q8WU68 220 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 MTRQ99707 1265 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 TLK1Q9UKI8 766 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 AQRO60306 1485 aaKnown RBP eCLIP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 C11orf95C9JLR9 678 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 EPHB4P54760 987 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 GRM1Q13255 1194 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 FSCBQ5H9T9 825 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 CATSPER1Q8NEC5 780 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 GOLGA8TH3BQL2 631 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 MED7O43513 233 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 GOLGA8HP0CJ92 632 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 TRMT10CQ7L0Y3 403 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 TEX11Q8IYF3 940 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 MAFGO15525 162 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 ACBD5Q5T8D3 534 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 AS3MTQ9HBK9 375 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 NIP7Q9Y221 180 aaKnown RBP eCLIP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 PRR23D1E9PI22 279 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 PRR23D2P0DMB1 279 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 SAT1P21673 171 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 PSMA4P25789 261 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 CEP85Q6P2H3 762 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 BZW1Q7L1Q6 419 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 SUPT20HQ8NEM7 779 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 KLHL29Q96CT2 875 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 GAS7O60861 476 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 CARSP49589 748 aaKnown RBP8.55□□□□□ -1.04
SYNE1-210ENST00000409694 KIF9Q9HAQ2 790 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 IQANK1A0A1B0GTG1 560 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 MAPK13O15264 365 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 HNRNPRO43390 633 aaKnown RBP8.54□□□□□ -1.04
SYNE1-210ENST00000409694 MYCLP12524 364 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-210ENST00000409694 SYTL2Q9HCH5 934 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 GPCPD1Q9NPB8 672 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 SMCO2A6NFE2 343 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 WASLO00401 505 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-210ENST00000409694 HLA-DPA1P20036 260 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 TCIRG1Q13488 830 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 FRA10AC1Q70Z53 315 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 ASPSCR1Q9BZE9 553 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 PHF8Q9UPP1 1060 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 KDRP35968 1356 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 TFDP1Q14186 410 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 PTK2BQ14289 1009 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 SESTD1Q86VW0 696 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 THUMPD2Q9BTF0 503 aaKnown RBP8.54□□□□□ -1.04
SYNE1-210ENST00000409694 TLR3O15455 904 aaKnown RBP8.54□□□□□ -1.04
SYNE1-210ENST00000409694 SLC1A4P43007 532 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 NBPF9Q3BBW0 867 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 RTCBQ9Y3I0 505 aaKnown RBP8.54□□□□□ -1.04
SYNE1-210ENST00000409694 SCYL2Q6P3W7 929 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 NEK8Q86SG6 692 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 OR8K1Q8NGG5 319 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 HSPA1AP0DMV8 641 aaKnown RBP8.54□□□□□ -1.04
SYNE1-210ENST00000409694 HSPA1BP0DMV9 641 aaKnown RBP8.54□□□□□ -1.04
SYNE1-210ENST00000409694 KRT33BQ14525 404 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 KIF22Q14807 665 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 USHBP1Q8N6Y0 703 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 DEPDC1BQ8WUY9 529 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 PGBD1Q96JS3 809 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 DACH2Q96NX9 599 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 MRC2Q9UBG0 1479 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 FAM160B1Q5W0V3 765 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 CPSF3Q9UKF6 684 aaKnown RBP8.54□□□□□ -1.04
SYNE1-210ENST00000409694 PMLP29590 882 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 MORC3Q14149 939 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 PHF21AQ96BD5 680 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 L3MBTL1Q9Y468 752 aa8.54□□□□□ -1.04
SYNE1-210ENST00000409694 PPIP5K1Q6PFW1 1433 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 RASSF10A6NK89 507 aa8.53□□□□□ -1.04
SYNE1-210ENST00000409694 C4BPBP20851 252 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms