RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MB21D1Q8N884 522 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 SLC26A6Q9BXS9 759 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 RBSNQ9H1K0 784 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 PNMA6FA0A0J9YX94 578 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 ZBTB5O15062 677 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 PEX10O60683 326 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 AKAP17AQ02040 695 aaKnown RBP15.43■□□□□ 0.06
LIMS1-204ENST00000409441 CRHR2Q13324 411 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 TMEM132BQ14DG7 1078 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 CDC37Q16543 378 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-204ENST00000409441 TRIM22Q8IYM9 498 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 CPXCR1Q8N123 301 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 REPS2Q8NFH8 660 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 GTF3C2Q8WUA4 911 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-204ENST00000409441 TSPY26PQ9H489 355 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 RNF186Q9NXI6 227 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 BTBD7Q9P203 1132 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 RABGAP1Q9Y3P9 1069 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 CNTNAP5Q8WYK1 1306 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 H3BQV1 296 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 TLR2O60603 784 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 TRPA1O75762 1119 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 FMNL1O95466 1100 aaPredicted RBP15.42■□□□□ 0.06
LIMS1-204ENST00000409441 RESTQ13127 1097 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 QRICH1Q2TAL8 776 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 IFFO2Q5TF58 517 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 ANKRD13CQ8N6S4 541 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 RGS22Q8NE09 1264 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 PAGR1Q9BTK6 254 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 RNF26Q9BY78 433 aaPredicted RBP15.42■□□□□ 0.06
LIMS1-204ENST00000409441 RAVER2Q9HCJ3 691 aaKnown RBP15.42■□□□□ 0.06
LIMS1-204ENST00000409441 TXNRD2Q9NNW7 524 aa15.42■□□□□ 0.06
LIMS1-204ENST00000409441 SEC63Q9UGP8 760 aaKnown RBP15.42■□□□□ 0.06
LIMS1-204ENST00000409441 PTPDC1A2A3K4 754 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 CNMDO75829 334 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 TBC1D8O95759 1140 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 STAT3P40763 770 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 MAP2K1Q02750 393 aaPredicted RBP15.41■□□□□ 0.06
LIMS1-204ENST00000409441 PLS1Q14651 629 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 Q3C1V9 767 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 GPRC5AQ8NFJ5 357 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 DDX11Q96FC9 970 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 AGBL1Q96MI9 1066 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 R3HDMLQ9H3Y0 253 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 CPA4Q9UI42 421 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 ZNF536O15090 1300 aa15.41■□□□□ 0.06
LIMS1-204ENST00000409441 ATP2A1O14983 1001 aa15.4■□□□□ 0.06
LIMS1-204ENST00000409441 PPP1R11O60927 126 aaPredicted RBP15.4■□□□□ 0.06
LIMS1-204ENST00000409441 ICAM1P05362 532 aa15.4■□□□□ 0.06
LIMS1-204ENST00000409441 FDPSP14324 419 aaKnown RBP15.4■□□□□ 0.06
LIMS1-204ENST00000409441 OAZ1P54368 228 aa15.4■□□□□ 0.06
LIMS1-204ENST00000409441 PKN1Q16512 942 aa15.4■□□□□ 0.06
LIMS1-204ENST00000409441 ATL3Q6DD88 541 aa15.4■□□□□ 0.06
LIMS1-204ENST00000409441 C17orf99Q6UX52 265 aa15.4■□□□□ 0.06
LIMS1-204ENST00000409441 FBXO11Q86XK2 927 aa15.4■□□□□ 0.06
LIMS1-204ENST00000409441 AMNQ9BXJ7 453 aa15.4■□□□□ 0.06
LIMS1-204ENST00000409441 ORC3Q9UBD5 711 aaPredicted RBP15.4■□□□□ 0.06
LIMS1-204ENST00000409441 ZNF214Q9UL59 606 aaPredicted RBP15.4■□□□□ 0.06
LIMS1-204ENST00000409441 BAZ2BQ9UIF8 2168 aaKnown RBP15.4■□□□□ 0.06
LIMS1-204ENST00000409441 RLFQ13129 1914 aa15.4■□□□□ 0.06
LIMS1-204ENST00000409441 ADGRA2Q96PE1 1338 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 DEXIO95424 95 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 PFKFB3Q16875 520 aaPredicted RBP15.39■□□□□ 0.05
LIMS1-204ENST00000409441 FERMT3Q86UX7 667 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 TRIM44Q96DX7 344 aaPredicted RBP15.39■□□□□ 0.05
LIMS1-204ENST00000409441 TEX13BQ9BXU2 312 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 SPATC1LQ9H0A9 340 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 MORF4L1Q9UBU8 362 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 PNMA2Q9UL42 364 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 CCPG1Q9ULG6 757 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 PCDHA1Q9Y5I3 950 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 BCRP11274 1271 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 SCG2P13521 617 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 ERVK-9P63128 1117 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 ERVK-24P63145 666 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 USH1GQ495M9 461 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 SNRNP48Q6IEG0 339 aaKnown RBP15.39■□□□□ 0.05
LIMS1-204ENST00000409441 COA7Q96BR5 231 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 SPATA32Q96LK8 384 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 BEGAINQ9BUH8 593 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 CFHR5Q9BXR6 569 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 CFAP45Q9UL16 551 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 RIPK3Q9Y572 518 aa15.39■□□□□ 0.05
LIMS1-204ENST00000409441 STK36Q9NRP7 1315 aa15.38■□□□□ 0.05
LIMS1-204ENST00000409441 ALAS1P13196 640 aa15.38■□□□□ 0.05
LIMS1-204ENST00000409441 TRAF1Q13077 416 aa15.38■□□□□ 0.05
LIMS1-204ENST00000409441 FAM110CQ1W6H9 321 aa15.38■□□□□ 0.05
LIMS1-204ENST00000409441 HEATR3Q7Z4Q2 680 aa15.38■□□□□ 0.05
LIMS1-204ENST00000409441 MOV10L1Q9BXT6 1211 aaKnown RBP15.38■□□□□ 0.05
LIMS1-204ENST00000409441 WBP1LQ9NX94 342 aa15.38■□□□□ 0.05
LIMS1-204ENST00000409441 TAL1P17542 331 aaPredicted RBP15.37■□□□□ 0.05
LIMS1-204ENST00000409441 KCNA4P22459 653 aa15.37■□□□□ 0.05
LIMS1-204ENST00000409441 CCNA1P78396 465 aa15.37■□□□□ 0.05
LIMS1-204ENST00000409441 UVSSAQ2YD98 709 aa15.37■□□□□ 0.05
LIMS1-204ENST00000409441 WWC2Q6AWC2 1192 aa15.37■□□□□ 0.05
LIMS1-204ENST00000409441 RIOX2Q8IUF8 465 aa15.37■□□□□ 0.05
LIMS1-204ENST00000409441 LEO1Q8WVC0 666 aaPredicted RBP15.37■□□□□ 0.05
LIMS1-204ENST00000409441 WASF1Q92558 559 aa15.37■□□□□ 0.05
LIMS1-204ENST00000409441 GPKOWQ92917 476 aaPredicted RBP eCLIP15.37■□□□□ 0.05
LIMS1-204ENST00000409441 AIFM3Q96NN9 605 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms