RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 BMS1Q14692 1282 aaKnown RBP6.68□□□□□ -1.34
CLK1-202ENST00000409403 NLRC3Q7RTR2 1065 aa6.68□□□□□ -1.34
CLK1-202ENST00000409403 DYMQ7RTS9 669 aa6.68□□□□□ -1.34
CLK1-202ENST00000409403 TAB3Q8N5C8 712 aaPredicted RBP6.68□□□□□ -1.34
CLK1-202ENST00000409403 KCT2Q8NC54 265 aa6.68□□□□□ -1.34
CLK1-202ENST00000409403 MKL1Q969V6 931 aa6.68□□□□□ -1.34
CLK1-202ENST00000409403 ACSF2Q96CM8 615 aaPredicted RBP6.68□□□□□ -1.34
CLK1-202ENST00000409403 ATG4CQ96DT6 458 aa6.68□□□□□ -1.34
CLK1-202ENST00000409403 SCARF2Q96GP6 870 aaPredicted RBP6.68□□□□□ -1.34
CLK1-202ENST00000409403 GSX1Q9H4S2 264 aaPredicted RBP6.68□□□□□ -1.34
CLK1-202ENST00000409403 PIF1Q9H611 641 aa6.68□□□□□ -1.34
CLK1-202ENST00000409403 AKTIPQ9H8T0 292 aa6.68□□□□□ -1.34
CLK1-202ENST00000409403 PIDD1Q9HB75 910 aa6.68□□□□□ -1.34
CLK1-202ENST00000409403 CHMP5Q9NZZ3 219 aa6.68□□□□□ -1.34
CLK1-202ENST00000409403 WNK3Q9BYP7 1800 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 HCLS1P14317 486 aaPredicted RBP6.67□□□□□ -1.34
CLK1-202ENST00000409403 NME1P15531 152 aaKnown RBP6.67□□□□□ -1.34
CLK1-202ENST00000409403 ASPAP45381 313 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 CTCFP49711 727 aaPredicted RBP6.67□□□□□ -1.34
CLK1-202ENST00000409403 YARSP54577 528 aaKnown RBP6.67□□□□□ -1.34
CLK1-202ENST00000409403 CDCP2Q5VXM1 449 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 GIMAP6Q6P9H5 292 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 CDC37L1Q7L3B6 337 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 HID1Q8IV36 788 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 MCATQ8IVS2 390 aaKnown RBP6.67□□□□□ -1.34
CLK1-202ENST00000409403 C16orf71Q8IYS4 520 aaPredicted RBP6.67□□□□□ -1.34
CLK1-202ENST00000409403 C2CD4AQ8NCU7 369 aaPredicted RBP6.67□□□□□ -1.34
CLK1-202ENST00000409403 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.67□□□□□ -1.34
CLK1-202ENST00000409403 NACC1Q96RE7 527 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 CEP41Q9BYV8 373 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 TNKS2Q9H2K2 1166 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 CNNM2Q9H8M5 875 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 TJP2Q9UDY2 1190 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 ACTL7BQ9Y614 415 aa6.67□□□□□ -1.34
CLK1-202ENST00000409403 OVOS2A0A0G2JMS6 1433 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 OVOS2A0A0J9YW53 1432 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 OVOS2Q6IE36 1432 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 ALX3O95076 343 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 POLD1P28340 1107 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 MCM5P33992 734 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 NRG1Q02297 640 aaPredicted RBP6.66□□□□□ -1.34
CLK1-202ENST00000409403 FXNQ16595 210 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 ARSHQ5FYA8 562 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 INTS3Q68E01 1043 aaKnown RBP6.66□□□□□ -1.34
CLK1-202ENST00000409403 TTC6Q86TZ1 520 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 MRPL41Q8IXM3 137 aaKnown RBP6.66□□□□□ -1.34
CLK1-202ENST00000409403 SLFN12Q8IYM2 578 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 FAM13CQ8NE31 585 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 TMEM87BQ96K49 555 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 CCDC94Q9BW85 323 aaPredicted RBP6.66□□□□□ -1.34
CLK1-202ENST00000409403 SLC12A7Q9Y666 1083 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 ALS2Q96Q42 1657 aa6.66□□□□□ -1.34
CLK1-202ENST00000409403 TRPM3Q9HCF6 1732 aaPredicted RBP6.66□□□□□ -1.34
CLK1-202ENST00000409403 A0A1W2PQH9 124 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 CHURC1-FNTBB4DL54 471 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 C9orf172C9J069 976 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 RNF225M0QZC1 329 aaPredicted RBP6.65□□□□□ -1.34
CLK1-202ENST00000409403 TNFRSF10CO14798 259 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 SMARCA5O60264 1052 aaPredicted RBP6.65□□□□□ -1.34
CLK1-202ENST00000409403 GLB1P16278 677 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 COL8A1P27658 744 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 PREPP48147 710 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 RASSF7Q02833 373 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 DDR2Q16832 855 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 TXNRD1Q16881 649 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 LARP1BQ659C4 914 aaKnown RBP6.65□□□□□ -1.34
CLK1-202ENST00000409403 SLC6A19Q695T7 634 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 Q6ZS46 218 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 CELF2-AS1Q8N7Q2 184 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 ISL2Q96A47 359 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 MRFAP1L1Q96HT8 127 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 PPP1R9BQ96SB3 815 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 SRPK1Q96SB4 655 aaKnown RBP6.65□□□□□ -1.34
CLK1-202ENST00000409403 PANK2Q9BZ23 570 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 FBRSQ9HAH7 460 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 FAM105AQ9NUU6 356 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 SLC52A1Q9NWF4 448 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 ATP7BP35670 1465 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 ADAMTS7Q9UKP4 1686 aa6.65□□□□□ -1.34
CLK1-202ENST00000409403 IBTKQ9P2D0 1353 aaPredicted RBP6.65□□□□□ -1.35
CLK1-202ENST00000409403 CUL9Q8IWT3 2517 aa6.65□□□□□ -1.35
CLK1-202ENST00000409403 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.65□□□□□ -1.35
CLK1-202ENST00000409403 SART1O43290 800 aaKnown RBP6.65□□□□□ -1.35
CLK1-202ENST00000409403 RNGTTO60942 597 aaKnown RBP6.65□□□□□ -1.35
CLK1-202ENST00000409403 ACRP10323 421 aa6.65□□□□□ -1.35
CLK1-202ENST00000409403 RAG1P15918 1043 aa6.65□□□□□ -1.35
CLK1-202ENST00000409403 ZNF827Q17R98 1081 aa6.65□□□□□ -1.35
CLK1-202ENST00000409403 SMYD4Q8IYR2 804 aaPredicted RBP6.65□□□□□ -1.35
CLK1-202ENST00000409403 SSU72Q9NP77 194 aaKnown RBP6.65□□□□□ -1.35
CLK1-202ENST00000409403 KCPQ6ZWJ8 1503 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 PIK3C2AO00443 1686 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 IFT172Q9UG01 1749 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 UPK3BL1B0FP48 263 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 UPK3BL2E5RIL1 263 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 GAS2O43903 313 aaKnown RBP6.64□□□□□ -1.35
CLK1-202ENST00000409403 CDK11BP21127 795 aaKnown RBP6.64□□□□□ -1.35
CLK1-202ENST00000409403 CAP2P40123 477 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 NKG7Q16617 165 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 UNC5AQ6ZN44 842 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 LRP10Q7Z4F1 713 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms