RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 RDH13Q8NBN7 331 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 CACTINQ8WUQ7 758 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 AZI2Q9H6S1 392 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 COPRSQ9NQ92 184 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 PASKQ96RG2 1323 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 TOM1O60784 492 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 RPSAP08865 295 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 P4HA1P13674 534 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 EPHB4P54760 987 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 PTGDRQ13258 359 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 SCINQ9Y6U3 715 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 CCDC151A5D8V7 595 aa11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 INPP1P49441 399 aa11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 UBE3CQ15386 1083 aa11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 HADHQ16836 314 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 OTUD6AQ7L8S5 288 aa11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 FOXP1Q9H334 677 aaPredicted RBP11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 YY1AP1Q9H869 796 aa11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 COL4A3BPQ9Y5P4 624 aa11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 SUN1O94901 812 aa11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 BTG4Q9NY30 223 aa11.21□□□□□ -0.61
LIMCH1-203ENST00000396595 MAN1A1P33908 653 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 PDCD2Q16342 344 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 NSMFQ6X4W1 530 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 ARMC9Q7Z3E5 817 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 NSMCE1Q8WV22 266 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 C8orf37Q96NL8 207 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 TUBGCP2Q9BSJ2 902 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 SLC24A3Q9HC58 644 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 ATF2P15336 505 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 BRDTQ58F21 947 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 CMTR1Q8N1G2 835 aaKnown RBP11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 CHURC1Q8WUH1 139 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 CNOT6LQ96LI5 555 aaKnown RBP11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 TSC22D3Q99576 134 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 HAUS2Q9NVX0 235 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 RCOR1Q9UKL0 485 aa11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 RRP15Q9Y3B9 282 aaKnown RBP11.21□□□□□ -0.62
LIMCH1-203ENST00000396595 ARHGAP42A6NI28 874 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 KRT19P08727 400 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 ADAM9Q13443 819 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 EFCAB13Q8IY85 973 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 TRIM6Q9C030 488 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 C1orf112Q9NSG2 853 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 ERVV-2B6SEH9 535 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 LAD1O00515 517 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 ZYXQ15942 572 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 DPCR1Q3MIW9 517 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 ADCK5Q3MIX3 580 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 CCDC197Q8NCU1 140 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 HOOK2Q96ED9 719 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 DHTKD1Q96HY7 919 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 CHAMP1Q96JM3 812 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 UIMC1Q96RL1 719 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 PSTPIP2Q9H939 334 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 SLC39A2Q9NP94 309 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 PRPF6O94906 941 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 CLTAP09496 248 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 PDE6CP51160 858 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 NLRX1Q86UT6 975 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 CPXCR1Q8N123 301 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 IL17REQ8NFR9 667 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 ANTXR1Q9H6X2 564 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 GPR108Q9NPR9 543 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 CCNL1Q9UK58 526 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 CARMIL3Q8ND23 1372 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 MYOM2P54296 1465 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 KLRF2D3W0D1 207 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 H0YCG3 227 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 EVI5O60447 810 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 SKOR1P84550 965 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 EHHADHQ08426 723 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 ZMYM1Q5SVZ6 1142 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 FAM178BQ8IXR5 827 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 NSUN7Q8NE18 718 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 INTS9Q9NV88 658 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 RNF14Q9UBS8 474 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 AFG3L2Q9Y4W6 797 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 RPS8P62241 208 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 AOC3Q16853 763 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 SH3GL3Q99963 347 aa11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 RNF26Q9BY78 433 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-203ENST00000396595 EIF4G3O43432 1585 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 POLD1P28340 1107 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 EXOC3L4Q17RC7 722 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 DPP8Q6V1X1 898 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 DEPTORQ8TB45 409 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 LRRC8CQ8TDW0 803 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 EXOC4Q96A65 974 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 MX2P20592 715 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 ARHGAP4P98171 946 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 C11orf57Q6ZUT1 292 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 TEX2Q8IWB9 1127 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 ANKRD13CQ8N6S4 541 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 MIS12Q9H081 205 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 KDM5AP29375 1690 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 PCCAP05165 728 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 LMNB1P20700 586 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 CFAP61Q8NHU2 1237 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms