RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 GOPCQ9HD26 462 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 PCDHA7Q9UN72 937 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 LOC285556D6RIA3 1793 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 TESPA1A2RU30 521 aaPredicted RBP16.29■□□□□ 0.2
HMGA1-203ENST00000374116 TRPA1O75762 1119 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 ECM2O94769 699 aaPredicted RBP16.29■□□□□ 0.2
HMGA1-203ENST00000374116 TM4SF4P48230 202 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 PLCB2Q00722 1185 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 SREBF2Q12772 1141 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 SF3A1Q15459 793 aaKnown RBP16.29■□□□□ 0.2
HMGA1-203ENST00000374116 FASTKD5Q7L8L6 764 aaKnown RBP16.29■□□□□ 0.2
HMGA1-203ENST00000374116 CCDC144CPQ8IYA2 1237 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 FBXO28Q9NVF7 368 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 AGTPBP1Q9UPW5 1226 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 KIF28PB7ZC32 967 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 AP5Z1O43299 807 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 FMNL1O95466 1100 aaPredicted RBP16.29■□□□□ 0.2
HMGA1-203ENST00000374116 NBPF11Q86T75 865 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 LUZP1Q86V48 1076 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 PROCA1Q8NCQ7 364 aaPredicted RBP16.29■□□□□ 0.2
HMGA1-203ENST00000374116 PHKBQ93100 1093 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 AIFM3Q96NN9 605 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 CPVLQ9H3G5 476 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 SH2D4AQ9H788 454 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 CLIC4Q9Y696 253 aa16.29■□□□□ 0.2
HMGA1-203ENST00000374116 GOLGA6L6A8MZA4 724 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 SPTLC2O15270 562 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 TBC1D8O95759 1140 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 SLC1A4P43007 532 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 ZNF165P49910 485 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 PPP2R5BQ15173 497 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 TTBK2Q6IQ55 1244 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 CREBRFQ8IUR6 639 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 NUP133Q8WUM0 1156 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 GPCPD1Q9NPB8 672 aa16.28■□□□□ 0.2
HMGA1-203ENST00000374116 STX1AQ16623 288 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 RTN1Q16799 776 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 CCDC96Q2M329 555 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 ANO1Q5XXA6 986 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 KRT40Q6A162 431 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 ZNF654Q8IZM8 581 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 FMR1NBQ8N0W7 255 aaPredicted RBP16.27■□□□□ 0.2
HMGA1-203ENST00000374116 FANCBQ8NB91 859 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 GMCL1P1Q8NEA9 526 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 WASF1Q92558 559 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 ANKS1AQ92625 1134 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 C12orf42Q96LP6 360 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 RNF186Q9NXI6 227 aa16.27■□□□□ 0.2
HMGA1-203ENST00000374116 TMEM232C9JQI7 657 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 RIOK3O14730 519 aaKnown RBP16.26■□□□□ 0.19
HMGA1-203ENST00000374116 PDHBP11177 359 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 U2AF2P26368 475 aaKnown RBP eCLIP16.26■□□□□ 0.19
HMGA1-203ENST00000374116 SLC16A2P36021 539 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 INHBEP58166 350 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 SSRP1Q08945 709 aaKnown RBP16.26■□□□□ 0.19
HMGA1-203ENST00000374116 TRIM29Q14134 588 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 TAF1CQ15572 869 aaPredicted RBP16.26■□□□□ 0.19
HMGA1-203ENST00000374116 POTEEQ6S8J3 1075 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 ANKRD23Q86SG2 305 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 STAG2Q8N3U4 1231 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 P2RX7Q99572 595 aaKnown RBP16.26■□□□□ 0.19
HMGA1-203ENST00000374116 ASCC2Q9H1I8 757 aaPredicted RBP16.26■□□□□ 0.19
HMGA1-203ENST00000374116 DNAJC25Q9H1X3 360 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 THSD7BQ9C0I4 1608 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 CCDC196A0A1B0GTZ2 297 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 FLOT1O75955 427 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 SNAP25P60880 206 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 CRHR2Q13324 411 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 CCDC178Q5BJE1 867 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 CATSPERGQ6ZRH7 1159 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 LPAR1Q92633 364 aa16.26■□□□□ 0.19
HMGA1-203ENST00000374116 WDR46O15213 610 aaKnown RBP16.25■□□□□ 0.19
HMGA1-203ENST00000374116 BMP3P12645 472 aa16.25■□□□□ 0.19
HMGA1-203ENST00000374116 NT5C2P49902 561 aa16.25■□□□□ 0.19
HMGA1-203ENST00000374116 IRX3P78415 501 aaPredicted RBP16.25■□□□□ 0.19
HMGA1-203ENST00000374116 IKQ13123 557 aaPredicted RBP16.25■□□□□ 0.19
HMGA1-203ENST00000374116 CMTR1Q8N1G2 835 aaKnown RBP16.25■□□□□ 0.19
HMGA1-203ENST00000374116 UBA5Q9GZZ9 404 aa16.25■□□□□ 0.19
HMGA1-203ENST00000374116 TTC12Q9H892 705 aaPredicted RBP16.25■□□□□ 0.19
HMGA1-203ENST00000374116 USP17L15C9J2P7 530 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 USP17L13C9JLJ4 530 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 USP17L11C9JVI0 530 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 USP17L18D6R9N7 530 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 USP17L22D6RA61 530 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 USP17L17D6RBQ6 530 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 USP17L19D6RCP7 530 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 USP17L20D6RJB6 530 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 USP17L24Q0WX57 530 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 FUT2Q10981 343 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 TROAPQ12815 778 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 GNL2Q13823 731 aaKnown RBP16.24■□□□□ 0.19
HMGA1-203ENST00000374116 SLC39A14Q15043 492 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.24■□□□□ 0.19
HMGA1-203ENST00000374116 KIFC2Q96AC6 838 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 SLC26A6Q9BXS9 759 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 ANO10Q9NW15 660 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 CPA4Q9UI42 421 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 BAZ2BQ9UIF8 2168 aaKnown RBP16.24■□□□□ 0.19
HMGA1-203ENST00000374116 CCDC66A2RUB6 948 aa16.24■□□□□ 0.19
HMGA1-203ENST00000374116 CMA1P23946 247 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms