RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PTPN20Q4JDL3 420 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 RBM23Q86U06 439 aaKnown RBP3.9□□□□□ -1.78
SYNE1-201ENST00000341594 PARP8Q8N3A8 854 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 FBXO18Q8NFZ0 1043 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 UBAP1Q9NZ09 502 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 PALD1Q9ULE6 856 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 NFAT5O94916 1531 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 TTLL13PA6NNM8 815 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CALB2P22676 271 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 RNASELQ05823 741 aaKnown RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 SFSWAPQ12872 951 aaKnown RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 PNOCQ13519 176 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 FSD1Q9BTV5 496 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 ATP10BO94823 1461 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 TAF1LQ8IZX4 1826 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 WDR19Q8NEZ3 1342 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC162PA2VCL2 907 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 TXNDC9O14530 226 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CPA3P15088 417 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 PAX7P23759 505 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 ANAPC1Q9H1A4 1944 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 UBN2Q6ZU65 1347 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 HACE1Q8IYU2 909 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 OGFOD1Q8N543 542 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 SMAD5Q99717 465 aaKnown RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 C21orf2O43822 256 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 KRT18P05783 430 aaKnown RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 SMCR8Q8TEV9 937 aaPredicted RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 SCYL1Q96KG9 808 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 ALS2CR12Q96Q35 445 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 TAB2Q9NYJ8 693 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 SIPA1L1O43166 1804 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 SMAPO00193 183 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 RFC1P35251 1148 aaPredicted RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 DMPKQ09013 629 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC6Q16204 474 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 BEND3Q5T5X7 828 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 HDGFL1Q5TGJ6 251 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 HEATR1Q9H583 2144 aaKnown RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 RBBP6Q7Z6E9 1792 aaKnown RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 FNDC1Q4ZHG4 1894 aaPredicted RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 UBASH3AP57075 661 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 TAF5Q15542 800 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CACTINQ8WUQ7 758 aaKnown RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC47Q96A33 483 aaKnown RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 AIFM3Q96NN9 605 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 SPOCK3Q9BQ16 436 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 H0YC42 278 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 TPD52P55327 224 aaPredicted RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 ZNF654Q8IZM8 581 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 TTC14Q96N46 770 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 H0YIN7 160 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CFLARO15519 480 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 KRT14P02533 472 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 HNRNPCP07910 306 aaKnown RBP eCLIP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 FOSL2P15408 326 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 ANXA13P27216 316 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 SLC26A4O43511 780 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CTDSPL2Q05D32 466 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CACNA2D4Q7Z3S7 1137 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 ZBTB10Q96DT7 871 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 SYNPO2Q9UMS6 1093 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 RGPD5Q99666 1765 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 KDM6AO15550 1401 aaPredicted RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CDKL5O76039 1030 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 DYNC1I2Q13409 638 aaKnown RBP3.9□□□□□ -1.79
SYNE1-201ENST00000341594 WDR93Q6P2C0 686 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 ABTB2Q8N961 1025 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 ERVK-7P63135 1459 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 PDHBP11177 359 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 PRKG1Q13976 671 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 CACTIN-AS1Q8N1I8 211 aa3.9□□□□□ -1.79
SYNE1-201ENST00000341594 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 SMTNP53814 917 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 C14orf80Q86SX3 495 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 SPNS2Q8IVW8 549 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 KIF2BQ8N4N8 673 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 ARMC7Q9H6L4 198 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 EXOC1Q9NV70 894 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PACSIN3Q9UKS6 424 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 NRKQ7Z2Y5 1582 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PHF20L1A8MW92 1017 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PPM1FP49593 454 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 GPBP1L1Q9HC44 474 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 ADAM21Q9UKJ8 722 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 NOC2LQ9Y3T9 749 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PCK1P35558 622 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 MDM2Q00987 491 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 NFE2L2Q16236 605 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 EFCAB2Q5VUJ9 269 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 GPCPD1Q9NPB8 672 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 EIF6P56537 245 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 SNAPC5O75971 98 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 TRIM37O94972 964 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 MRPS9P82933 396 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PCGF5Q86SE9 256 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 LONP2Q86WA8 852 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 TBC1D2BQ9UPU7 963 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 ZC3H4Q9UPT8 1303 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 NCAPH2Q6IBW4 605 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms