RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 FSTL1Q12841 308 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 STIM1Q13586 685 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 RRP1BQ14684 758 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 SPECC1LQ69YQ0 1117 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 MIS18BP1Q6P0N0 1132 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CYB5D1Q6P9G0 228 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CCNI2Q6ZMN8 369 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 PPP1R42Q7Z4L9 355 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 ANKRD18AQ8IVF6 992 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 GSPT2Q8IYD1 628 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 LMBR1Q8WVP7 490 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 SELENOOQ9BVL4 669 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 OSBPL7Q9BZF2 842 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 GBP3Q9H0R5 595 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 SENP2Q9HC62 589 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 RWDD2BP57060 319 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 NMIQ13287 307 aaPredicted RBP6.27□□□□□ -1.41
CSDE1-202ENST00000339438 BICDL1Q6ZP65 573 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 KLHDC4Q8TBB5 520 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 RRP36Q96EU6 259 aaKnown RBP6.27□□□□□ -1.41
CSDE1-202ENST00000339438 LLPHQ9BRT6 129 aaKnown RBP6.27□□□□□ -1.41
CSDE1-202ENST00000339438 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.27□□□□□ -1.41
CSDE1-202ENST00000339438 FRMD3A2A2Y4 597 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 GOLGA6CA6NDK9 693 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 GOLGA6DP0CG33 693 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 SCARF1Q14162 830 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 KCNB1Q14721 858 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 APOBEC3HQ6NTF7 200 aaKnown RBP6.27□□□□□ -1.41
CSDE1-202ENST00000339438 BLOC1S2Q6QNY1 142 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 PARP9Q8IXQ6 854 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 ARL8AQ96BM9 186 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 MMS19Q96T76 1030 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 DNAJC18Q9H819 358 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 KCNMB3Q9NPA1 279 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 POLR3EQ9NVU0 708 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 GOLGA6AQ9NYA3 693 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 REXO2Q9Y3B8 237 aaKnown RBP6.27□□□□□ -1.41
CSDE1-202ENST00000339438 SNUPNO95149 360 aaKnown RBP6.27□□□□□ -1.41
CSDE1-202ENST00000339438 CCDC175P0C221 793 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 PSMA5P28066 241 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 XRCC4Q13426 336 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 PDIA5Q14554 519 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 CFAP100Q494V2 611 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 SPATS2Q86XZ4 545 aaKnown RBP6.27□□□□□ -1.41
CSDE1-202ENST00000339438 RTKN2Q8IZC4 609 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 ACBD3Q9H3P7 528 aa6.27□□□□□ -1.41
CSDE1-202ENST00000339438 A0A1B0GTH6 734 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 RNF225M0QZC1 329 aaPredicted RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 OPLAHO14841 1288 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CBFA2T2O43439 604 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 NRDCO43847 1150 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 GRIN3BO60391 1043 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 SLC3A2P08195 630 aaKnown RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 PFKFB1P16118 471 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 ATP5JP18859 108 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CALRP27797 417 aaKnown RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 GJA5P36382 358 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 JAG1P78504 1218 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 NEXNQ0ZGT2 675 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 ZNF569Q5MCW4 686 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CEP85LQ5SZL2 805 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 TPTE2Q6XPS3 522 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 STOX1Q6ZVD7 989 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 BZW1Q7L1Q6 419 aaKnown RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 UBE3BQ7Z3V4 1068 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 TRPM4Q8TD43 1214 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 SLX1AQ9BQ83 275 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 PA2G4Q9UQ80 394 aaKnown RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CTAGE15A4D2H0 777 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 TAF5LO75529 589 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 SURF6O75683 361 aaKnown RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 GLRX3O76003 335 aaKnown RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CTAGE8P0CG41 777 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 ME1P48163 572 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 ERVK-24P63145 666 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 TRAF1Q13077 416 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CTAGE6Q86UF2 777 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CTAGE4Q8IX94 777 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CCDC24Q8N4L8 307 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 TSEN2Q8NCE0 465 aaKnown RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 C3orf20Q8ND61 904 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CNKSR1Q969H4 720 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 GDAP1L1Q96MZ0 367 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 NUP58Q9BVL2 599 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 EPN3Q9H201 632 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 HOMER3Q9NSC5 361 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 LMCD1Q9NZU5 365 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 DOCK3Q8IZD9 2030 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 NID2Q14112 1375 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CTAGE9A4FU28 777 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 A6NHS1 94 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 PDE2AO00408 941 aaPredicted RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 DDX58O95786 925 aaKnown RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 LINGO3P0C6S8 592 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 ZKSCAN1P17029 563 aaPredicted RBP6.26□□□□□ -1.41
CSDE1-202ENST00000339438 GABPAQ06546 454 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 CHRNDQ07001 517 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 NT5DC1Q5TFE4 455 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 C9orf131Q5VYM1 1079 aa6.26□□□□□ -1.41
CSDE1-202ENST00000339438 Q6ZUG5 572 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms