RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 SMCHD1A6NHR9 2005 aa11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 CCL15-CCL14A0A0B4J2E2 113 aa11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 ATP2A1O14983 1001 aa11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 TAL1P17542 331 aaPredicted RBP11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 ZNF157P51786 506 aaPredicted RBP11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 MRPL12P52815 198 aaKnown RBP11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 KRT85P78386 507 aa11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 CCL15Q16663 113 aa11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 REXO1Q8N1G1 1221 aaKnown RBP11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 BRI3BPQ8WY22 251 aa11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 PSTPIP2Q9H939 334 aa11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 RAVER2Q9HCJ3 691 aaKnown RBP11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 MRPL11Q9Y3B7 192 aaKnown RBP11.74□□□□□ -0.53
VIPAS39-201ENST00000327028 SLC10A3P09131 477 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 OSBPP22059 807 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 MKRN3Q13064 507 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 KRT25Q7Z3Z0 450 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 ANKRD23Q86SG2 305 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 MB21D1Q8N884 522 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 HHIPL1Q96JK4 782 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 AGBL1Q96MI9 1066 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 OPLAHO14841 1288 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 CLK2P49760 499 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 RASGRP4Q8TDF6 673 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 PNMA3Q9UL41 463 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 ZNF214Q9UL59 606 aaPredicted RBP11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 CNPY2Q9Y2B0 182 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 TESPA1A2RU30 521 aaPredicted RBP11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 FAM205CA6NFA0 338 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 NCLP19338 710 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 MCM4P33991 863 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 HERVK_113P62684 666 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 RILPL1Q5EBL4 403 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 EARS2Q5JPH6 523 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 MCTP2Q6DN12 878 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 PIK3AP1Q6ZUJ8 805 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 CPXCR1Q8N123 301 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 P2RX7Q99572 595 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 CFAP45Q9UL16 551 aa11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 ABT1Q9ULW3 272 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 NOL7Q9UMY1 257 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-201ENST00000327028 CCDC194A0A1B0GVG4 234 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 BTBD19C9JJ37 291 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 GOLGA6L22H0YM25 854 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 TRAPPC10P48553 1259 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 TMEM132BQ14DG7 1078 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 UBE2SQ16763 222 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 NOM1Q5C9Z4 860 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 GTF3C2Q8WUA4 911 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 USP28Q96RU2 1077 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 TEX13BQ9BXU2 312 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 BIN2Q9UBW5 565 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 MANSC4A6NHS7 340 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 DDX11L8A8MPP1 907 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 PIK3CDO00329 1044 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 AP3B2Q13367 1082 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 NONOQ15233 471 aaKnown RBP eCLIP11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 TKFCQ3LXA3 575 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 SNRNP48Q6IEG0 339 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 TMEM87AQ8NBN3 555 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 SCAND2PQ9GZW5 306 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 POLR3EQ9NVU0 708 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 TMEM260Q9NX78 707 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 RTEL1Q9NZ71 1219 aa11.72□□□□□ -0.53
VIPAS39-201ENST00000327028 MEIS2O14770 477 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 FIBPO43427 364 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 ALAS1P13196 640 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 NASPP49321 788 aaPredicted RBP11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 TOB1P50616 345 aaPredicted RBP11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 GHRHRQ02643 423 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 NFKBIBQ15653 356 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 CSPP1Q1MSJ5 1256 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 JAKMIP3Q5VZ66 844 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 POTEEQ6S8J3 1075 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 CLEC4DQ8WXI8 215 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 CCDC102AQ96A19 550 aa11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 TFIP11Q9UBB9 837 aaKnown RBP11.71□□□□□ -0.53
VIPAS39-201ENST00000327028 FAM155AB1AL88 458 aaPredicted RBP11.71□□□□□ -0.54
VIPAS39-201ENST00000327028 PDHXO00330 501 aa11.71□□□□□ -0.54
VIPAS39-201ENST00000327028 ANO1Q5XXA6 986 aa11.71□□□□□ -0.54
VIPAS39-201ENST00000327028 USP17L6PQ6QN14 398 aa11.71□□□□□ -0.54
VIPAS39-201ENST00000327028 MCF2L2Q86YR7 1114 aa11.71□□□□□ -0.54
VIPAS39-201ENST00000327028 SAMD3Q8N6K7 520 aa11.71□□□□□ -0.54
VIPAS39-201ENST00000327028 FTOQ9C0B1 505 aaKnown RBP eCLIP11.71□□□□□ -0.54
VIPAS39-201ENST00000327028 GCOM1H8Y6P7 765 aaPredicted RBP11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 CNMDO75829 334 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 YEATS4O95619 227 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 FOSP01100 380 aaPredicted RBP11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 POLR2MP0CAP2 368 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 STAT3P40763 770 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 LEO1Q8WVC0 666 aaPredicted RBP11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 SPATA32Q96LK8 384 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 TRERF1Q96PN7 1200 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 RNF146Q9NTX7 359 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 BTBD7Q9P203 1132 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 ELP1O95163 1332 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 NFIBO00712 420 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 PTMSP20962 102 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 HSD17B4P51659 736 aa11.7□□□□□ -0.54
VIPAS39-201ENST00000327028 MUM1L1Q5H9M0 696 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms