RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CYP7A1P22680 504 aa12.79□□□□□ -0.36
SHROOM3-201ENST00000296043 SLFNL1Q499Z3 407 aa12.79□□□□□ -0.36
SHROOM3-201ENST00000296043 NELFCDQ8IXH7 590 aa12.79□□□□□ -0.36
SHROOM3-201ENST00000296043 FGFR1OP2Q9NVK5 253 aa12.79□□□□□ -0.36
SHROOM3-201ENST00000296043 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.79□□□□□ -0.36
SHROOM3-201ENST00000296043 ERFP50548 548 aa12.79□□□□□ -0.36
SHROOM3-201ENST00000296043 AP2B1P63010 937 aa12.79□□□□□ -0.36
SHROOM3-201ENST00000296043 CFAP36Q96G28 342 aa12.79□□□□□ -0.36
SHROOM3-201ENST00000296043 CASKIN1Q8WXD9 1431 aa12.79□□□□□ -0.36
SHROOM3-201ENST00000296043 CYP2C19P33261 490 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 INHBAP08476 426 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 SERPINB4P48594 390 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 TRIP13Q15645 432 aaPredicted RBP12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 TCHHQ07283 1943 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 GPTP24298 496 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 MRPL50Q8N5N7 158 aaKnown RBP12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 LLPHQ9BRT6 129 aaKnown RBP12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 SNX14Q9Y5W7 946 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 ASXL1Q8IXJ9 1541 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 CAPN1P07384 714 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 PROSER2Q86WR7 435 aaPredicted RBP12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 ANKRD35Q8N283 1001 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 TMEM60Q9H2L4 133 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 PAX7P23759 505 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 FTOQ9C0B1 505 aaKnown RBP eCLIP12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 GRK2P25098 689 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 SYT2Q8N9I0 419 aaPredicted RBP12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 TRIML1Q8N9V2 468 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 NDEL1Q9GZM8 345 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 ZMYND12Q9H0C1 365 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 MYO1FO00160 1098 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 STAT2P52630 851 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 ARID5BQ14865 1188 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 ESCO1Q5FWF5 840 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 TDRD7Q8NHU6 1098 aaKnown RBP12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 GID8Q9NWU2 228 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 RAB20Q9NX57 234 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 MOCS3O95396 460 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 RNF34Q969K3 372 aa12.78□□□□□ -0.36
SHROOM3-201ENST00000296043 GNAT1P11488 350 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 ECE1P42892 770 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 LLGL1Q15334 1064 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 MYSM1Q5VVJ2 828 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 NUGGCQ68CJ6 796 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 TXNDC2Q86VQ3 553 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 B4GALNT2Q8NHY0 566 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 ANKRD2Q9GZV1 360 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 CFAP73A6NFT4 308 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 CYLC2Q14093 348 aaPredicted RBP12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 MPRIPQ6WCQ1 1025 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 SERPINI1Q99574 410 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 AZI2Q9H6S1 392 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 SPTLC3Q9NUV7 552 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 STX18Q9P2W9 335 aaKnown RBP12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 ARHGAP26Q9UNA1 814 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 SCG2P13521 617 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 SIX5Q8N196 739 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 TRIM55Q9BYV6 548 aa12.77□□□□□ -0.36
SHROOM3-201ENST00000296043 RNF113AO15541 343 aaKnown RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 CEP78Q5JTW2 689 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 RBM26Q5T8P6 1007 aaKnown RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 ARHGEF18Q6ZSZ5 1173 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 FAM161BQ96MY7 647 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 EPC1Q9H2F5 836 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 HAUS4Q9H6D7 363 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 GNAQP50148 359 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 CCDC84Q86UT8 332 aaPredicted RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 CATSPER3Q86XQ3 398 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 CARD9Q9H257 536 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 DNAJC17Q9NVM6 304 aaKnown RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 DISP3Q9P2K9 1392 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 DCTN3O75935 186 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 ATP5HO75947 161 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 TOGARAM2Q6ZUX3 1019 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 ATF3P18847 181 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 KRT4P19013 534 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 HDAC4P56524 1084 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 GFM2Q969S9 779 aaKnown RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 RUNDC3BQ96NL0 473 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 SERTAD1Q9UHV2 236 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 RALGAPBQ86X10 1494 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 NPR1P16066 1061 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 MAGOHP61326 146 aaKnown RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 SNX29Q8TEQ0 813 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 MAGOHBQ96A72 148 aaKnown RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 OSBPL9Q96SU4 736 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 KLHL25Q9H0H3 589 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 UBTFL6P0CB48 400 aaPredicted RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 MAP4P27816 1152 aaKnown RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 HEATR4Q86WZ0 1026 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 MAIP1Q8WWC4 291 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 DONSONQ9NYP3 566 aa12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 TRMT112Q9UI30 125 aaKnown RBP12.77□□□□□ -0.37
SHROOM3-201ENST00000296043 EXOC1LA0A1B0GW35 172 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 TLK2Q86UE8 772 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 TEX9Q8N6V9 391 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 LONP2Q86WA8 852 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 ATP6V0A1Q93050 837 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 CHPF2Q9P2E5 772 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 DBF4Q9UBU7 674 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms