RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 STK4Q13043 487 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 ODF2Q5BJF6 829 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 TMTC3Q6ZXV5 915 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 SLC4A9Q96Q91 983 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 BIN2Q9UBW5 565 aaPredicted RBP13.34□□□□□ -0.27
USHBP1-201ENST00000252597 N4BP2Q86UW6 1770 aaPredicted RBP13.34□□□□□ -0.27
USHBP1-201ENST00000252597 H7C1D1 291 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 PRPF3O43395 683 aaKnown RBP13.34□□□□□ -0.27
USHBP1-201ENST00000252597 KRT14P02533 472 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 TSPY3P0CV98 308 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 TSPY8P0CW00 308 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 PLCG1P19174 1290 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 MSANTD4Q8NCY6 345 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 FBXO3Q9UK99 471 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 HPCAL4Q9UM19 191 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 CAPN6Q9Y6Q1 641 aa13.34□□□□□ -0.27
USHBP1-201ENST00000252597 BMP15O95972 392 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 EIF4A3P38919 411 aaKnown RBP13.33□□□□□ -0.28
USHBP1-201ENST00000252597 EPS15P42566 896 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 NOP2P46087 812 aaKnown RBP13.33□□□□□ -0.28
USHBP1-201ENST00000252597 ATP2C1P98194 919 aaPredicted RBP13.33□□□□□ -0.28
USHBP1-201ENST00000252597 TROAPQ12815 778 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 CABP7Q86V35 215 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 ZNF444Q8N0Y2 327 aaPredicted RBP13.33□□□□□ -0.28
USHBP1-201ENST00000252597 PNMA1Q8ND90 353 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 GOLPH3Q9H4A6 298 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 JRKLQ9Y4A0 524 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 PARP4Q9UKK3 1724 aaKnown RBP13.33□□□□□ -0.28
USHBP1-201ENST00000252597 APBA1Q02410 837 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 SPTY2D1Q68D10 685 aaPredicted RBP13.33□□□□□ -0.28
USHBP1-201ENST00000252597 ANKRD40Q6AI12 368 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 C8orf74Q6P047 294 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 DISC1Q9NRI5 854 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 ABCA3Q99758 1704 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 KIAA0754O94854 1291 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 CCDC40Q4G0X9 1142 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 SOGA3Q5TF21 947 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 CAPS2Q9BXY5 557 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 MED4Q9NPJ6 270 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 LIMA1Q9UHB6 759 aaKnown RBP13.33□□□□□ -0.28
USHBP1-201ENST00000252597 RAB21Q9UL25 225 aa13.33□□□□□ -0.28
USHBP1-201ENST00000252597 ROBO1Q9Y6N7 1651 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 LGALS16A8MUM7 142 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 HSF2BPO75031 334 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 CYP19A1P11511 503 aaPredicted RBP13.32□□□□□ -0.28
USHBP1-201ENST00000252597 GUCY2DQ02846 1103 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 GFPT1Q06210 699 aaPredicted RBP13.32□□□□□ -0.28
USHBP1-201ENST00000252597 SEC23AQ15436 765 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 DIXDC1Q155Q3 683 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 ALX1Q15699 326 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 MAPKAPK5Q8IW41 473 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 CRNKL1Q9BZJ0 848 aaKnown RBP13.32□□□□□ -0.28
USHBP1-201ENST00000252597 NHSL1Q5SYE7 1610 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 TMCO5BA8MYB1 307 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 SYF2O95926 243 aaKnown RBP13.32□□□□□ -0.28
USHBP1-201ENST00000252597 KIF5BP33176 963 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 TXNRD1Q16881 649 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 TRMT1LQ7Z2T5 733 aaKnown RBP13.32□□□□□ -0.28
USHBP1-201ENST00000252597 TRIM31Q9BZY9 425 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 RBM28Q9NW13 759 aaKnown RBP13.32□□□□□ -0.28
USHBP1-201ENST00000252597 NFU1Q9UMS0 254 aa13.32□□□□□ -0.28
USHBP1-201ENST00000252597 SMIM23A6NLE4 172 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 ERLIN2O94905 339 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 PBX1P40424 430 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 DNM2P50570 870 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 PDXDC2PQ6P474 469 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 WDR59Q6PJI9 974 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 IRF2BP1Q8IU81 584 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 ARL8AQ96BM9 186 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 UBXN6Q9BZV1 441 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 PPANQ9NQ55 473 aaKnown RBP13.31□□□□□ -0.28
USHBP1-201ENST00000252597 AFDNP55196 1824 aaKnown RBP13.31□□□□□ -0.28
USHBP1-201ENST00000252597 KRT18P05783 430 aaKnown RBP13.31□□□□□ -0.28
USHBP1-201ENST00000252597 IRX3P78415 501 aaPredicted RBP13.31□□□□□ -0.28
USHBP1-201ENST00000252597 TRIM28Q13263 835 aaKnown RBP13.31□□□□□ -0.28
USHBP1-201ENST00000252597 TRIM14Q14142 442 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 TRAPPC11Q7Z392 1133 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 ADAT2Q7Z6V5 191 aaKnown RBP13.31□□□□□ -0.28
USHBP1-201ENST00000252597 HNRNPLLQ8WVV9 542 aaKnown RBP13.31□□□□□ -0.28
USHBP1-201ENST00000252597 CCDC43Q96MW1 224 aaKnown RBP13.31□□□□□ -0.28
USHBP1-201ENST00000252597 ALS2CR12Q96Q35 445 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 LAMA4Q16363 1823 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 HSPA1LP34931 641 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 TNNI2P48788 182 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 EHHADHQ08426 723 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 RAPGEF1Q13905 1077 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 IQCEQ6IPM2 695 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 USP17L2Q6R6M4 530 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 SLC51AQ86UW1 340 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 PPM1EQ8WY54 764 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 ANKIB1Q9P2G1 1089 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 CAPN7Q9Y6W3 813 aa13.31□□□□□ -0.28
USHBP1-201ENST00000252597 EPHB6O15197 1021 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 PPFIA4O75335 1185 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 MECOMQ03112 1051 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 ADSSL1Q8N142 457 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 EHBP1Q8NDI1 1231 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 SPATA20Q8TB22 786 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 TGFBRAP1Q8WUH2 860 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 EPB41L5Q9HCM4 733 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms