RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ZNF513Q8N8E2 541 aaPredicted RBP14.03□□□□□ -0.16
USP40-201ENST00000251722 CALR3Q96L12 384 aaKnown RBP14.03□□□□□ -0.16
USP40-201ENST00000251722 OSBPL3Q9H4L5 887 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 CDHR2Q9BYE9 1310 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 TMEM232C9JQI7 657 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 NOL3O60936 208 aaKnown RBP14.03□□□□□ -0.16
USP40-201ENST00000251722 DYNC1I2Q13409 638 aaKnown RBP14.03□□□□□ -0.16
USP40-201ENST00000251722 ALCAMQ13740 583 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 CCDC63Q8NA47 563 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 HAUS1Q96CS2 278 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 ZNF215Q9UL58 517 aaPredicted RBP14.03□□□□□ -0.16
USP40-201ENST00000251722 GUCA1BQ9UMX6 200 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 FDX1P10109 184 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 SFMBT2Q5VUG0 894 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 CAPN7Q9Y6W3 813 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 PFDN6O15212 129 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 ZNF445P59923 1031 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 SLMAPQ14BN4 828 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 SEPT2Q15019 361 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 E2F4Q16254 413 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 XKR9Q5GH70 373 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 ZSWIM6Q9HCJ5 1215 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 PARP2Q9UGN5 583 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 SERPINB13Q9UIV8 391 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 ADCY9O60503 1353 aa14.02□□□□□ -0.16
USP40-201ENST00000251722 ATP8B3O60423 1300 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 AFF2P51816 1311 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 SURF1Q15526 300 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 FAM47CQ5HY64 1035 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 GPBP1Q86WP2 473 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 CCT6BQ92526 530 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 EAF2Q96CJ1 260 aaPredicted RBP14.02□□□□□ -0.17
USP40-201ENST00000251722 UNC13BO14795 1591 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 ERFEQ4G0M1 354 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 MYSM1Q5VVJ2 828 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 GIMAP8Q8ND71 665 aaPredicted RBP14.02□□□□□ -0.17
USP40-201ENST00000251722 CCDC110Q8TBZ0 833 aa14.02□□□□□ -0.17
USP40-201ENST00000251722 APOBEC3FQ8IUX4 373 aaKnown RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 TNNI1P19237 187 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 KRT9P35527 623 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 FAM102BQ5T8I3 360 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 NOC2LQ9Y3T9 749 aaKnown RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 GTPBP6O43824 516 aaPredicted RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 XRCC5P13010 732 aaKnown RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 SCNN1DP51172 638 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 C2orf69Q8N8R5 385 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 NELFBQ8WX92 580 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 HESX1Q9UBX0 185 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 PSDA5PKW4 1024 aaPredicted RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 KCNQ3O43525 872 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 HNRNPH2P55795 449 aaKnown RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 ZNF569Q5MCW4 686 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 PDCD7Q8N8D1 485 aaKnown RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 NACC1Q96RE7 527 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 FOXP1Q9H334 677 aaPredicted RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 C1orf112Q9NSG2 853 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 USP31Q70CQ4 1352 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 ABCC12Q96J65 1359 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 CRB1P82279 1406 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 GOLGA8CPA6NN73 597 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 POLGP54098 1239 aaPredicted RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 USP6NLQ92738 828 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 NAPGQ99747 312 aaPredicted RBP14.01□□□□□ -0.17
USP40-201ENST00000251722 MTA3Q9BTC8 594 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 PCDHA1Q9Y5I3 950 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 USH1CQ9Y6N9 552 aa14.01□□□□□ -0.17
USP40-201ENST00000251722 KRT19P08727 400 aa14□□□□□ -0.17
USP40-201ENST00000251722 BMP3P12645 472 aa14□□□□□ -0.17
USP40-201ENST00000251722 HADHQ16836 314 aaKnown RBP14□□□□□ -0.17
USP40-201ENST00000251722 RPGRIP1Q96KN7 1286 aa14□□□□□ -0.17
USP40-201ENST00000251722 FAM114A2Q9NRY5 505 aa14□□□□□ -0.17
USP40-201ENST00000251722 VPS54Q9P1Q0 977 aa14□□□□□ -0.17
USP40-201ENST00000251722 RNF17Q9BXT8 1623 aaKnown RBP14□□□□□ -0.17
USP40-201ENST00000251722 ABCA9Q8IUA7 1624 aa14□□□□□ -0.17
USP40-201ENST00000251722 LMTK2Q8IWU2 1503 aa14□□□□□ -0.17
USP40-201ENST00000251722 GMNNO75496 209 aa14□□□□□ -0.17
USP40-201ENST00000251722 CD19P15391 556 aa14□□□□□ -0.17
USP40-201ENST00000251722 PTPREP23469 700 aa14□□□□□ -0.17
USP40-201ENST00000251722 CUL4BQ13620 913 aa14□□□□□ -0.17
USP40-201ENST00000251722 PRR16Q569H4 304 aa14□□□□□ -0.17
USP40-201ENST00000251722 PODNQ7Z5L7 613 aa14□□□□□ -0.17
USP40-201ENST00000251722 CCDC24Q8N4L8 307 aa14□□□□□ -0.17
USP40-201ENST00000251722 ZBTB9Q96C00 473 aa14□□□□□ -0.17
USP40-201ENST00000251722 RPS6KC1Q96S38 1066 aa14□□□□□ -0.17
USP40-201ENST00000251722 GINS2Q9Y248 185 aa14□□□□□ -0.17
USP40-201ENST00000251722 SUGT1Q9Y2Z0 365 aa14□□□□□ -0.17
USP40-201ENST00000251722 UTP11Q9Y3A2 253 aaKnown RBP14□□□□□ -0.17
USP40-201ENST00000251722 CFAP65Q6ZU64 1925 aaKnown RBP14□□□□□ -0.17
USP40-201ENST00000251722 DCAF4Q8WV16 495 aa14□□□□□ -0.17
USP40-201ENST00000251722 PPFIA2O75334 1257 aa14□□□□□ -0.17
USP40-201ENST00000251722 ADD2P35612 726 aa14□□□□□ -0.17
USP40-201ENST00000251722 TRIM11Q96F44 468 aa14□□□□□ -0.17
USP40-201ENST00000251722 TRIM7Q9C029 511 aa14□□□□□ -0.17
USP40-201ENST00000251722 CTTNBP2NLQ9P2B4 639 aa14□□□□□ -0.17
USP40-201ENST00000251722 CROCC2H7BZ55 1655 aa14□□□□□ -0.17
USP40-201ENST00000251722 RFX7Q2KHR2 1363 aa14□□□□□ -0.17
USP40-201ENST00000251722 TLR3O15455 904 aaKnown RBP13.99□□□□□ -0.17
USP40-201ENST00000251722 METTL13Q8N6R0 699 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 PIGBQ92521 554 aa13.99□□□□□ -0.17
USP40-201ENST00000251722 NCOA5Q9HCD5 579 aaKnown RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms