RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	FBXO11	Q86XK2	927 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	ERO1B	Q86YB8	467 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	PRPF38A	Q8NAV1	312 aa	Known RBP	13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	LEO1	Q8WVC0	666 aa	Predicted RBP	13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	USP28	Q96RU2	1077 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	AMN	Q9BXJ7	453 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	NMRK2	Q9NPI5	230 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	POLR3E	Q9NVU0	708 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	TMOD4	Q9NZQ9	345 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	PCDHA1	Q9Y5I3	950 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	RLF	Q13129	1914 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	TRIM75P	A6NK02	468 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823		M0R2N6	131 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	TRAK2	O60296	914 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	YEATS4	O95619	227 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	FDX1	P10109	184 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	VCAM1	P19320	739 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	NASP	P49321	788 aa	Predicted RBP	13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	ADCY7	P51828	1080 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	MRPL12	P52815	198 aa	Known RBP	13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	FKBP1B	P68106	108 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	ANO1	Q5XXA6	986 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	KIFC2	Q96AC6	838 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	SLF1	Q9BQI6	1058 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	RANBP17	Q9H2T7	1088 aa	Known RBP	13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	ELP3	Q9H9T3	547 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	RIC8A	Q9NPQ8	531 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	NOL7	Q9UMY1	257 aa	Known RBP	13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	PCDHA6	Q9UN73	950 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	PCDHA8	Q9Y5H6	950 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	CLIC4	Q9Y696	253 aa		13.49	□□□□□ -0.25
CLN6-223	ENST00000637823	SPDYE5	A6NIY4	337 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	TRAF5	O00463	557 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	CXCL11	O14625	94 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	TRAPPC10	P48553	1259 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	TOB1	P50616	345 aa	Predicted RBP	13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	HMGCS2	P54868	508 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	UBE2H	P62256	183 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	CEBPZ	Q03701	1054 aa	Known RBP	13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	SLC39A14	Q15043	492 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	MOB2	Q70IA6	237 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	KRT25	Q7Z3Z0	450 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	TEX2	Q8IWB9	1127 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	CUL5	Q93034	780 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	CLMN	Q96JQ2	1002 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	TANGO6	Q9C0B7	1094 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	PSTPIP2	Q9H939	334 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	FBXO28	Q9NVF7	368 aa		13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	DDX49	Q9Y6V7	483 aa	Known RBP	13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	COL11A1	P12107	1806 aa	Predicted RBP	13.48	□□□□□ -0.25
CLN6-223	ENST00000637823	CCDC194	A0A1B0GVG4	234 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	ADAMTS3	O15072	1205 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	GADD45B	O75293	160 aa	Predicted RBP	13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	MBD3	O95983	291 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	SNAP25	P60880	206 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	PPIL2	Q13356	520 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	STK38	Q15208	465 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	SF3A1	Q15459	793 aa	Known RBP	13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	KLHL40	Q2TBA0	621 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	EARS2	Q5JPH6	523 aa	Known RBP	13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	MCTP2	Q6DN12	878 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	CHADL	Q6NUI6	762 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	LINC00301	Q8NCQ3	95 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	KCNG4	Q8TDN1	519 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	ZNF526	Q8TF50	670 aa	Predicted RBP	13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	SLC10A4	Q96EP9	437 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	PNMA2	Q9UL42	364 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	PPP1R9A	Q9ULJ8	1098 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	CEP131	Q9UPN4	1083 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	LOC285556	D6RIA3	1793 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	MYH7B	A7E2Y1	1941 aa		13.47	□□□□□ -0.25
CLN6-223	ENST00000637823	GOLGA6L4	A6NEF3	574 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	FAM205C	A6NFA0	338 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	USP17L15	C9J2P7	530 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	USP17L13	C9JLJ4	530 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	USP17L11	C9JVI0	530 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	USP17L18	D6R9N7	530 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	USP17L22	D6RA61	530 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	USP17L17	D6RBQ6	530 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	USP17L19	D6RCP7	530 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	USP17L20	D6RJB6	530 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	SPTLC2	O15270	562 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	ZBED4	O75132	1171 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	FLOT1	O75955	427 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	USP17L24	Q0WX57	530 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	DGKZ	Q13574	1117 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	COG2	Q14746	738 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	CATSPERG	Q6ZRH7	1159 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	PIK3AP1	Q6ZUJ8	805 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	REXO1	Q8N1G1	1221 aa	Known RBP	13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	C2orf69	Q8N8R5	385 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	ZNF408	Q9H9D4	720 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	GBA2	Q9HCG7	927 aa	Predicted RBP	13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	KCNH4	Q9UQ05	1017 aa		13.46	□□□□□ -0.25
CLN6-223	ENST00000637823	ABCB11	O95342	1321 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823		A0A0G2JLL6	359 aa	Predicted RBP	13.45	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms