RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 HOOK2Q96ED9 719 aa19.28■□□□□ 0.68
CLN3-252ENST00000636907 TNMDQ9H2S6 317 aa19.28■□□□□ 0.68
CLN3-252ENST00000636907 GINM1Q9NU53 330 aa19.28■□□□□ 0.68
CLN3-252ENST00000636907 PPP2R3BQ9Y5P8 575 aa19.28■□□□□ 0.68
CLN3-252ENST00000636907 BMP15O95972 392 aa19.27■□□□□ 0.68
CLN3-252ENST00000636907 ADCY7P51828 1080 aa19.27■□□□□ 0.68
CLN3-252ENST00000636907 GRIN1Q05586 938 aa19.27■□□□□ 0.68
CLN3-252ENST00000636907 L1TD1Q5T7N2 865 aaKnown RBP19.27■□□□□ 0.68
CLN3-252ENST00000636907 KRT25Q7Z3Z0 450 aa19.27■□□□□ 0.68
CLN3-252ENST00000636907 GRPEL1Q9HAV7 217 aa19.27■□□□□ 0.68
CLN3-252ENST00000636907 ZNF112Q9UJU3 913 aa19.27■□□□□ 0.68
CLN3-252ENST00000636907 PITPNM2Q9BZ72 1349 aa19.27■□□□□ 0.68
CLN3-252ENST00000636907 KINO60870 393 aaKnown RBP19.27■□□□□ 0.67
CLN3-252ENST00000636907 PFKFB1P16118 471 aa19.27■□□□□ 0.67
CLN3-252ENST00000636907 SNAP25P60880 206 aa19.27■□□□□ 0.67
CLN3-252ENST00000636907 MAP3K11Q16584 847 aa19.27■□□□□ 0.67
CLN3-252ENST00000636907 INF2Q27J81 1249 aa19.27■□□□□ 0.67
CLN3-252ENST00000636907 RESP18Q5W5W9 173 aa19.27■□□□□ 0.67
CLN3-252ENST00000636907 REXO1Q8N1G1 1221 aaKnown RBP19.27■□□□□ 0.67
CLN3-252ENST00000636907 BIN2Q9UBW5 565 aaPredicted RBP19.27■□□□□ 0.67
CLN3-252ENST00000636907 SRPRBQ9Y5M8 271 aaKnown RBP19.27■□□□□ 0.67
CLN3-252ENST00000636907 SRCAPQ6ZRS2 3230 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 SSC5DA1L4H1 1573 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 DOCK1Q14185 1865 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 MRE11P49959 708 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 STAT2P52630 851 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 JAKMIP3Q5VZ66 844 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 RBM43Q6ZSC3 357 aaKnown RBP19.26■□□□□ 0.67
CLN3-252ENST00000636907 TSPY26PQ9H489 355 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 RIC8AQ9NPQ8 531 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 TMEM260Q9NX78 707 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 PRR12Q9ULL5 1215 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 FZD1Q9UP38 647 aa19.26■□□□□ 0.67
CLN3-252ENST00000636907 FAM237AA0A1B0GTK4 181 aa19.25■□□□□ 0.67
CLN3-252ENST00000636907 MCM7P33993 719 aa19.25■□□□□ 0.67
CLN3-252ENST00000636907 ATP2C1P98194 919 aaPredicted RBP19.25■□□□□ 0.67
CLN3-252ENST00000636907 PTGDRQ13258 359 aa19.25■□□□□ 0.67
CLN3-252ENST00000636907 DPY19L2Q6NUT2 758 aa19.25■□□□□ 0.67
CLN3-252ENST00000636907 CKAP2LQ8IYA6 745 aa19.25■□□□□ 0.67
CLN3-252ENST00000636907 FEZ1Q99689 392 aa19.25■□□□□ 0.67
CLN3-252ENST00000636907 FUCA2Q9BTY2 467 aa19.25■□□□□ 0.67
CLN3-252ENST00000636907 HPSEQ9Y251 543 aa19.25■□□□□ 0.67
CLN3-252ENST00000636907 XRCC6P12956 609 aaKnown RBP eCLIP19.24■□□□□ 0.67
CLN3-252ENST00000636907 NONOQ15233 471 aaKnown RBP eCLIP19.24■□□□□ 0.67
CLN3-252ENST00000636907 SPECC1Q5M775 1068 aa19.24■□□□□ 0.67
CLN3-252ENST00000636907 ZNF579Q8NAF0 562 aaKnown RBP19.24■□□□□ 0.67
CLN3-252ENST00000636907 WRNIP1Q96S55 665 aa19.24■□□□□ 0.67
CLN3-252ENST00000636907 RBSNQ9H1K0 784 aa19.24■□□□□ 0.67
CLN3-252ENST00000636907 PCDHA1Q9Y5I3 950 aa19.24■□□□□ 0.67
CLN3-252ENST00000636907 POLR2AP24928 1970 aaKnown RBP19.24■□□□□ 0.67
CLN3-252ENST00000636907 SCYL3Q8IZE3 742 aa19.24■□□□□ 0.67
CLN3-252ENST00000636907 CUL5Q93034 780 aa19.24■□□□□ 0.67
CLN3-252ENST00000636907 ZKSCAN4Q969J2 545 aaPredicted RBP19.24■□□□□ 0.67
CLN3-252ENST00000636907 L3MBTL3Q96JM7 780 aaPredicted RBP19.24■□□□□ 0.67
CLN3-252ENST00000636907 AMNQ9BXJ7 453 aa19.24■□□□□ 0.67
CLN3-252ENST00000636907 PLA2G6O60733 806 aa19.23■□□□□ 0.67
CLN3-252ENST00000636907 ZNF202O95125 648 aa19.23■□□□□ 0.67
CLN3-252ENST00000636907 UBE2SQ16763 222 aa19.23■□□□□ 0.67
CLN3-252ENST00000636907 FBXO11Q86XK2 927 aa19.23■□□□□ 0.67
CLN3-252ENST00000636907 FERMT2Q96AC1 680 aa19.23■□□□□ 0.67
CLN3-252ENST00000636907 KIAA1683Q9H0B3 1180 aa19.23■□□□□ 0.67
CLN3-252ENST00000636907 CSRNP2Q9H175 543 aa19.23■□□□□ 0.67
CLN3-252ENST00000636907 CTAGE5O15320 804 aa19.22■□□□□ 0.67
CLN3-252ENST00000636907 SYKP43405 635 aa19.22■□□□□ 0.67
CLN3-252ENST00000636907 CLK2P49760 499 aaKnown RBP19.22■□□□□ 0.67
CLN3-252ENST00000636907 MRPL12P52815 198 aaKnown RBP19.22■□□□□ 0.67
CLN3-252ENST00000636907 SUPT20HL1Q3ZLR7 823 aa19.22■□□□□ 0.67
CLN3-252ENST00000636907 DLK2Q6UY11 383 aa19.22■□□□□ 0.67
CLN3-252ENST00000636907 C4orf32Q8N8J7 132 aa19.22■□□□□ 0.67
CLN3-252ENST00000636907 TBCKQ8TEA7 893 aa19.22■□□□□ 0.67
CLN3-252ENST00000636907 CHURC1Q8WUH1 139 aa19.22■□□□□ 0.67
CLN3-252ENST00000636907 DCPSQ96C86 337 aaKnown RBP19.22■□□□□ 0.67
CLN3-252ENST00000636907 KLRG1Q96E93 195 aa19.22■□□□□ 0.67
CLN3-252ENST00000636907 PSTPIP2Q9H939 334 aa19.22■□□□□ 0.67
CLN3-252ENST00000636907 ADM5C9JUS6 153 aa19.21■□□□□ 0.67
CLN3-252ENST00000636907 GRIN3BO60391 1043 aa19.21■□□□□ 0.67
CLN3-252ENST00000636907 DGKZQ13574 1117 aa19.21■□□□□ 0.67
CLN3-252ENST00000636907 FAM160B2Q86V87 743 aa19.21■□□□□ 0.67
CLN3-252ENST00000636907 FEM1BQ9UK73 627 aa19.21■□□□□ 0.67
CLN3-252ENST00000636907 ZC3H4Q9UPT8 1303 aaKnown RBP19.21■□□□□ 0.67
CLN3-252ENST00000636907 WDR46O15213 610 aaKnown RBP19.2■□□□□ 0.66
CLN3-252ENST00000636907 TAL1P17542 331 aaPredicted RBP19.2■□□□□ 0.66
CLN3-252ENST00000636907 USH1GQ495M9 461 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 NEK8Q86SG6 692 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 SULF1Q8IWU6 871 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 LPAR1Q92633 364 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 KIFC2Q96AC6 838 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 RANBP17Q9H2T7 1088 aaKnown RBP19.2■□□□□ 0.66
CLN3-252ENST00000636907 PICK1Q9NRD5 415 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 FBXO28Q9NVF7 368 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 FAM13BQ9NYF5 915 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 KCNH3Q9ULD8 1083 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 VWA3AA6NCI4 1184 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 CCDC192P0DO97 292 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 PTPRAP18433 802 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 EPHX2P34913 555 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 MTMR2Q13614 643 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 IL17AQ16552 155 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 LETM2Q2VYF4 491 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 TIGD1Q96MW7 591 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms