RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 STXBP3O00186 592 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 GUCY1B3Q02153 619 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 TYW1BQ6NUM6 668 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 FBXO18Q8NFZ0 1043 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 ASCC2Q9H1I8 757 aaPredicted RBP23.74■■□□□ 1.39
CLN3-245ENST00000636172 SLC38A10Q9HBR0 1119 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 TESPA1A2RU30 521 aaPredicted RBP23.74■■□□□ 1.39
CLN3-245ENST00000636172 BTBD19C9JJ37 291 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 VWA5AO00534 786 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 IRX3P78415 501 aaPredicted RBP23.74■■□□□ 1.39
CLN3-245ENST00000636172 PABPC4Q13310 644 aaKnown RBP eCLIP23.74■■□□□ 1.39
CLN3-245ENST00000636172 KRT40Q6A162 431 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 CCDC174Q6PII3 467 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 PTPN18Q99952 460 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 HOXC10Q9NYD6 342 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 MTMR6Q9Y217 621 aa23.74■■□□□ 1.39
CLN3-245ENST00000636172 VPS37CA5D8V6 355 aaPredicted RBP23.73■■□□□ 1.39
CLN3-245ENST00000636172 MANSC4A6NHS7 340 aaPredicted RBP23.73■■□□□ 1.39
CLN3-245ENST00000636172 RASSF10A6NK89 507 aa23.73■■□□□ 1.39
CLN3-245ENST00000636172 H3BQV1 296 aa23.73■■□□□ 1.39
CLN3-245ENST00000636172 hCG_1984214I3L0E3 225 aa23.73■■□□□ 1.39
CLN3-245ENST00000636172 IFFO2Q5TF58 517 aa23.73■■□□□ 1.39
CLN3-245ENST00000636172 ANKRD23Q86SG2 305 aa23.73■■□□□ 1.39
CLN3-245ENST00000636172 FBXO11Q86XK2 927 aa23.73■■□□□ 1.39
CLN3-245ENST00000636172 ZNF713Q8N859 430 aaPredicted RBP23.73■■□□□ 1.39
CLN3-245ENST00000636172 COA7Q96BR5 231 aa23.73■■□□□ 1.39
CLN3-245ENST00000636172 SH3GLB2Q9NR46 395 aa23.73■■□□□ 1.39
CLN3-245ENST00000636172 ZNF536O15090 1300 aa23.73■■□□□ 1.39
CLN3-245ENST00000636172 SMCHD1A6NHR9 2005 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 ZBED4O75132 1171 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 FDX1P10109 184 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 XBP1P17861 261 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 TRIM29Q14134 588 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 CYP4F22Q6NT55 531 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 PAXIP1Q6ZW49 1069 aaPredicted RBP23.72■■□□□ 1.39
CLN3-245ENST00000636172 RGS22Q8NE09 1264 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 REPS2Q8NFH8 660 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 P2RX7Q99572 595 aaKnown RBP23.72■■□□□ 1.39
CLN3-245ENST00000636172 AMNQ9BXJ7 453 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 CHMP5Q9NZZ3 219 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 KCNJ14Q9UNX9 436 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 SLC45A1Q9Y2W3 748 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 ZDHHC9Q9Y397 364 aa23.72■■□□□ 1.39
CLN3-245ENST00000636172 PDHXO00330 501 aa23.71■■□□□ 1.39
CLN3-245ENST00000636172 TAL1P17542 331 aaPredicted RBP23.71■■□□□ 1.39
CLN3-245ENST00000636172 OSBPP22059 807 aa23.71■■□□□ 1.39
CLN3-245ENST00000636172 POTEEQ6S8J3 1075 aa23.71■■□□□ 1.39
CLN3-245ENST00000636172 FAM43AQ8N2R8 423 aa23.71■■□□□ 1.39
CLN3-245ENST00000636172 PHF20Q9BVI0 1012 aa23.71■■□□□ 1.39
CLN3-245ENST00000636172 BRD1O95696 1058 aa23.7■■□□□ 1.38
CLN3-245ENST00000636172 ICAM1P05362 532 aa23.7■■□□□ 1.38
CLN3-245ENST00000636172 PDIA4P13667 645 aaKnown RBP23.7■■□□□ 1.38
CLN3-245ENST00000636172 NAPAP54920 295 aa23.7■■□□□ 1.38
CLN3-245ENST00000636172 HERVK_113P62684 666 aa23.7■■□□□ 1.38
CLN3-245ENST00000636172 HTRA3P83110 453 aa23.7■■□□□ 1.38
CLN3-245ENST00000636172 LBX2Q6XYB7 198 aa23.7■■□□□ 1.38
CLN3-245ENST00000636172 PCDHA1Q9Y5I3 950 aa23.7■■□□□ 1.38
CLN3-245ENST00000636172 MMP1P03956 469 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 NUCB2P80303 420 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 GRM1Q13255 1194 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 DEFB115Q30KQ5 88 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 USH1GQ495M9 461 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 PPP1R18Q6NYC8 613 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 FAM177A1Q8N128 213 aaPredicted RBP23.69■■□□□ 1.38
CLN3-245ENST00000636172 CCDC148Q8NFR7 591 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 AGBL1Q96MI9 1066 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 RAVER2Q9HCJ3 691 aaKnown RBP23.69■■□□□ 1.38
CLN3-245ENST00000636172 PNMA3Q9UL41 463 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 WDR33Q9C0J8 1336 aaKnown RBP23.69■■□□□ 1.38
CLN3-245ENST00000636172 ZSCAN22P10073 491 aaPredicted RBP23.69■■□□□ 1.38
CLN3-245ENST00000636172 NPY5RQ15761 445 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 CPXCR1Q8N123 301 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 CCDC12Q8WUD4 166 aaPredicted RBP23.69■■□□□ 1.38
CLN3-245ENST00000636172 ZIC5Q96T25 663 aa23.69■■□□□ 1.38
CLN3-245ENST00000636172 CTDP1Q9Y5B0 961 aaPredicted RBP23.69■■□□□ 1.38
CLN3-245ENST00000636172 IGF2BP3O00425 579 aaKnown RBP eCLIP23.68■■□□□ 1.38
CLN3-245ENST00000636172 CYP2C8P10632 490 aa23.68■■□□□ 1.38
CLN3-245ENST00000636172 NLRP5P59047 1200 aa23.68■■□□□ 1.38
CLN3-245ENST00000636172 TMEM132BQ14DG7 1078 aa23.68■■□□□ 1.38
CLN3-245ENST00000636172 FOXD4L5Q5VV16 416 aaPredicted RBP23.68■■□□□ 1.38
CLN3-245ENST00000636172 MB21D1Q8N884 522 aa23.68■■□□□ 1.38
CLN3-245ENST00000636172 FOXD4L4Q8WXT5 416 aaPredicted RBP23.68■■□□□ 1.38
CLN3-245ENST00000636172 CAPNS2Q96L46 248 aa23.68■■□□□ 1.38
CLN3-245ENST00000636172 ZNF214Q9UL59 606 aaPredicted RBP23.68■■□□□ 1.38
CLN3-245ENST00000636172 CCPG1Q9ULG6 757 aa23.68■■□□□ 1.38
CLN3-245ENST00000636172 ESYT2A0FGR8 921 aa23.67■■□□□ 1.38
CLN3-245ENST00000636172 ATP2A1O14983 1001 aa23.67■■□□□ 1.38
CLN3-245ENST00000636172 OAZ1P54368 228 aa23.67■■□□□ 1.38
CLN3-245ENST00000636172 INHBEP58166 350 aa23.67■■□□□ 1.38
CLN3-245ENST00000636172 ZMYND12Q9H0C1 365 aa23.67■■□□□ 1.38
CLN3-245ENST00000636172 SMCO2A6NFE2 343 aa23.66■■□□□ 1.38
CLN3-245ENST00000636172 ADAMTS3O15072 1205 aa23.66■■□□□ 1.38
CLN3-245ENST00000636172 TRAF1Q13077 416 aa23.66■■□□□ 1.38
CLN3-245ENST00000636172 FERMT3Q86UX7 667 aa23.66■■□□□ 1.38
CLN3-245ENST00000636172 BTBD7Q9P203 1132 aa23.66■■□□□ 1.38
CLN3-245ENST00000636172 ABCB11O95342 1321 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 PEX10O60683 326 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 CNMDO75829 334 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 CALML3P27482 149 aa23.65■■□□□ 1.38
CLN3-245ENST00000636172 KIF23Q02241 960 aaPredicted RBP23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms