RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ZNF658Q5TYW1 1059 aaPredicted RBP12.25□□□□□ -0.45
CLN3-244ENST00000636147 ADAT2Q7Z6V5 191 aaKnown RBP12.25□□□□□ -0.45
CLN3-244ENST00000636147 CCDC25Q86WR0 208 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 LPIN2Q92539 896 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 N4BP2L2Q92802 583 aaPredicted RBP12.25□□□□□ -0.45
CLN3-244ENST00000636147 AGXT2Q9BYV1 514 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 AGPAT5Q9NUQ2 364 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 EHD2Q9NZN4 543 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 DLC1Q96QB1 1528 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 CDC42BPGQ6DT37 1551 aa12.25□□□□□ -0.45
CLN3-244ENST00000636147 CLTAP09496 248 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 KRT13P13646 458 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 NR1D1P20393 614 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 A6NNZ2 444 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 PP2D1A8MPX8 630 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 EXOC5O00471 708 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 ACTN4O43707 911 aaKnown RBP12.24□□□□□ -0.45
CLN3-244ENST00000636147 CCNT1O60563 726 aaKnown RBP12.24□□□□□ -0.45
CLN3-244ENST00000636147 PDE8BO95263 885 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 HNRNPH1P31943 449 aaKnown RBP12.24□□□□□ -0.45
CLN3-244ENST00000636147 PEX19P40855 299 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 SOS2Q07890 1332 aaPredicted RBP12.24□□□□□ -0.45
CLN3-244ENST00000636147 TUBB8Q3ZCM7 444 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 SLC9C1Q4G0N8 1177 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 CCNI2Q6ZMN8 369 aaPredicted RBP12.24□□□□□ -0.45
CLN3-244ENST00000636147 NELFCDQ8IXH7 590 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 ANKS4BQ8N8V4 417 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 MAP3K14Q99558 947 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 DPH5Q9H2P9 285 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 SALL1Q9NSC2 1324 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 STIM2Q9P246 746 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 RIPOR2Q9Y4F9 1068 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 NEO1Q92859 1461 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 GOLGA6L10A0A0M3HER8 536 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 BUB1BO60566 1050 aaPredicted RBP12.24□□□□□ -0.45
CLN3-244ENST00000636147 CIAO1O76071 339 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 ZNF18P17022 549 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 SEC24CP53992 1094 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 TBX2Q13207 712 aaPredicted RBP12.24□□□□□ -0.45
CLN3-244ENST00000636147 EZH2Q15910 746 aaKnown RBP12.24□□□□□ -0.45
CLN3-244ENST00000636147 KIAA0753Q2KHM9 967 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 NAA35Q5VZE5 725 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 CABP7Q86V35 215 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 CXorf56Q9H5V9 222 aa12.24□□□□□ -0.45
CLN3-244ENST00000636147 RBM28Q9NW13 759 aaKnown RBP12.24□□□□□ -0.45
CLN3-244ENST00000636147 CEMIPQ8WUJ3 1361 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 PALLDQ8WX93 1383 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 TOB1P50616 345 aaPredicted RBP12.23□□□□□ -0.45
CLN3-244ENST00000636147 TMEM139Q8IV31 216 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 IGDCC4Q8TDY8 1250 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 RRP36Q96EU6 259 aaKnown RBP12.23□□□□□ -0.45
CLN3-244ENST00000636147 ZSCAN10Q96SZ4 725 aaPredicted RBP12.23□□□□□ -0.45
CLN3-244ENST00000636147 RNF26Q9BY78 433 aaPredicted RBP12.23□□□□□ -0.45
CLN3-244ENST00000636147 RAB34Q9BZG1 259 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 VEZTQ9HBM0 779 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 PPP2R5AQ15172 486 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 RPAINQ86UA6 219 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 CACNA2D3Q8IZS8 1091 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 DMGDHQ9UI17 866 aaKnown RBP12.23□□□□□ -0.45
CLN3-244ENST00000636147 NEURL4Q96JN8 1562 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 FANCGO15287 622 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 TSPY3P0CV98 308 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 TSPY8P0CW00 308 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 ZBED6P86452 979 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 RPS6KA1Q15418 735 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 SV2BQ7L1I2 683 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 ZNF579Q8NAF0 562 aaKnown RBP12.23□□□□□ -0.45
CLN3-244ENST00000636147 SPATA4Q8NEY3 305 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 TCP11Q8WWU5 503 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 RSRC1Q96IZ7 334 aaKnown RBP12.23□□□□□ -0.45
CLN3-244ENST00000636147 CRNKL1Q9BZJ0 848 aaKnown RBP12.23□□□□□ -0.45
CLN3-244ENST00000636147 RAB21Q9UL25 225 aa12.23□□□□□ -0.45
CLN3-244ENST00000636147 KIF20BQ96Q89 1820 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 NEFHP12036 1026 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 EEF1GP26641 437 aaKnown RBP12.22□□□□□ -0.45
CLN3-244ENST00000636147 KLHL30Q0D2K2 578 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 PAIP2Q9BPZ3 127 aaKnown RBP12.22□□□□□ -0.45
CLN3-244ENST00000636147 LACRTQ9GZZ8 138 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 LGALS16A8MUM7 142 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 NBPF26B4DH59 902 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 SCG2P13521 617 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 PDE6BP35913 854 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 TECP42680 631 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 KIF11P52732 1056 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 NBPF10Q6P3W6 841 aaKnown RBP12.22□□□□□ -0.45
CLN3-244ENST00000636147 DAAM2Q86T65 1068 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 CCDC84Q86UT8 332 aaPredicted RBP12.22□□□□□ -0.45
CLN3-244ENST00000636147 DZIP3Q86Y13 1208 aaKnown RBP12.22□□□□□ -0.45
CLN3-244ENST00000636147 NBPF15Q8N660 670 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 PCDHA13Q9Y5I0 950 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 RFX7Q2KHR2 1363 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 UTYO14607 1347 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 TNNI2P48788 182 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 LRRC41Q15345 812 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 RUFY4Q6ZNE9 571 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 TRMT1LQ7Z2T5 733 aaKnown RBP12.22□□□□□ -0.45
CLN3-244ENST00000636147 KSR1Q8IVT5 923 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 BLIDQ8IZY5 108 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 MICAL1Q8TDZ2 1067 aa12.22□□□□□ -0.45
CLN3-244ENST00000636147 ARL8AQ96BM9 186 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 784.7 ms