RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	ERVK13-1	Q9NX77	482 aa		4.83	□□□□□ -1.64
CNOT1-223	ENST00000628857	ZMYM5	Q9UJ78	669 aa		4.83	□□□□□ -1.64
CNOT1-223	ENST00000628857	MINPP1	Q9UNW1	487 aa		4.83	□□□□□ -1.64
CNOT1-223	ENST00000628857	EMC9	Q9Y3B6	208 aa		4.83	□□□□□ -1.64
CNOT1-223	ENST00000628857	TRBV23OR9-2	A0A075B6M9	112 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	ZNF503-AS2	A6NEH8	195 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	NOTO	A8MTQ0	251 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	HRK	O00198	91 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	NOP56	O00567	594 aa	Known RBP	4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	AURKA	O14965	403 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	FGF10	O15520	208 aa	Predicted RBP	4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	STK10	O94804	968 aa	Known RBP	4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	TBC1D8	O95759	1140 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	CORO7	P57737	925 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	AMPD2	Q01433	879 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	GALNT18	Q6P9A2	607 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	CRTC3	Q6UUV7	619 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	C6orf15	Q6UXA7	325 aa	Predicted RBP	4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	ANKS3	Q6ZW76	656 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	EEPD1	Q7L9B9	569 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	LRP10	Q7Z4F1	713 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	NLRX1	Q86UT6	975 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	IRF2BP1	Q8IU81	584 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	CKAP2L	Q8IYA6	745 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	TMEM52	Q8NDY8	209 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	SHISA4	Q96DD7	197 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	TANGO6	Q9C0B7	1094 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	NOL6	Q9H6R4	1146 aa	Known RBP	4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	CGGBP1	Q9UFW8	167 aa	Predicted RBP	4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	ACSL6	Q9UKU0	697 aa		4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	YBX2	Q9Y2T7	364 aa	Known RBP	4.82	□□□□□ -1.64
CNOT1-223	ENST00000628857	DDAH1	O94760	285 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	CAPNS1	P04632	268 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	PNLIP	P16233	465 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	CEBPA	P49715	358 aa	Predicted RBP	4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	RTP1	P59025	263 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	LAPTM5	Q13571	262 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	SLC14A2	Q15849	920 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	DDR2	Q16832	855 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	ST13P5	Q8NFI4	369 aa	Predicted RBP	4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	SGSM3	Q96HU1	749 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	MRGPRX3	Q96LB0	322 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	SLC6A17	Q9H1V8	727 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	CYP26B1	Q9NR63	512 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	AP5S1	Q9NUS5	200 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	AKT3	Q9Y243	479 aa		4.81	□□□□□ -1.64
CNOT1-223	ENST00000628857	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	SUSD5	O60279	629 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	FARP2	O94887	1054 aa	Predicted RBP	4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	GSTM1	P09488	218 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	HOXC12	P31275	282 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	ERVFC1	P60507	584 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	LARP1B	Q659C4	914 aa	Known RBP	4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	CEP128	Q6ZU80	1094 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	SLCO6A1	Q86UG4	719 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	TRIM59	Q8IWR1	403 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	COPS5	Q92905	334 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	FGD4	Q96M96	766 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	PTCHD1	Q96NR3	888 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	CDADC1	Q9BWV3	514 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	KRTAP4-8	Q9BYQ9	185 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	CCDC113	Q9H0I3	377 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	FAM86C1	Q9NVL1	165 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	SIRPG	Q9P1W8	387 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	SUGT1	Q9Y2Z0	365 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	MSRB2	Q9Y3D2	182 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	BACE2	Q9Y5Z0	518 aa		4.8	□□□□□ -1.64
CNOT1-223	ENST00000628857	IQCA1L	A6NCM1	817 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	C2orf71	A6NGG8	1288 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	AGRP	O00253	132 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	MEIS1	O00470	390 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	PSPN	O60542	156 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	PEX10	O60683	326 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	FKTN	O75072	461 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	GJB6	O95452	261 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	CP	P00450	1065 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	SCG5	P05408	212 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	TESK1	Q15569	626 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	HSF5	Q4G112	596 aa	Predicted RBP	4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	IQCE	Q6IPM2	695 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	ZPBP2	Q6X784	338 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	NPM2	Q86SE8	214 aa	Known RBP	4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	MICAL1	Q8TDZ2	1067 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	MKL1	Q969V6	931 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	FAM84A	Q96KN4	292 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	ZDHHC15	Q96MV8	337 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	RNF32	Q9H0A6	362 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	NKX2-4	Q9H2Z4	354 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	C19orf44	Q9H6X5	657 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	APEX2	Q9UBZ4	518 aa		4.79	□□□□□ -1.64
CNOT1-223	ENST00000628857	ABLIM1	O14639	778 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	U2SURP	O15042	1029 aa	Known RBP	4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	USP2	O75604	605 aa	Predicted RBP	4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	CD3E	P07766	207 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	ARL4A	P40617	200 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	SEPHS1	P49903	392 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	ERVFRD-1	P60508	538 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	MESP2	Q0VG99	397 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	PPP2R5D	Q14738	602 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	TIGD5	Q53EQ6	642 aa		4.78	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms