RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LRFN4Q6PJG9 635 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 HDXQ7Z353 690 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 ABHD4Q8TB40 342 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 ANKRD24Q8TF21 1146 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 UBE2FQ969M7 185 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 FBRSQ9HAH7 460 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 SLAMF8Q9P0V8 285 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 ERBINQ96RT1 1412 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 SOWAHDA6NJG2 315 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 B8ZZF3 427 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 TREHO43280 583 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 TOMM70O94826 608 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 CBX7O95931 251 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 KCNA10Q16322 511 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 SLC15A2Q16348 729 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 CIAPIN1Q6FI81 312 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 LETMD1Q6P1Q0 360 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 ATG14Q6ZNE5 492 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 KRT28Q7Z3Y7 464 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 TTC6Q86TZ1 520 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 FBF1Q8TES7 1133 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 KRTAP4-5Q9BYR2 181 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 WNT10AQ9GZT5 417 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 CD320Q9NPF0 282 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 RRP7BPQ9NSQ0 103 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 CEP162Q5TB80 1403 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 SPATA31A1Q5TZJ5 1347 aa6.73□□□□□ -1.33
LINC00540-201ENST00000611481 ROBO2Q9HCK4 1378 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 PCNTO95613 3336 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 TCAF2A6NFQ2 919 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 GIPC1O14908 333 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 PLSCR1O15162 318 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 MED14OSP0DP75 135 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 CYP7A1P22680 504 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 ETF1P62495 437 aaKnown RBP6.72□□□□□ -1.33
LINC00540-201ENST00000611481 LCE5AQ5TCM9 118 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 PCNX4Q63HM2 1172 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 HID1Q8IV36 788 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 RIN3Q8TB24 985 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 PLPPR2Q96GM1 343 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 COX4I2Q96KJ9 171 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 ZSWIM5Q9P217 1185 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 USP35Q9P2H5 1018 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 BIN2Q9UBW5 565 aaPredicted RBP6.72□□□□□ -1.33
LINC00540-201ENST00000611481 TNS3Q68CZ2 1445 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 ABCA3Q99758 1704 aa6.72□□□□□ -1.33
LINC00540-201ENST00000611481 CCDC144AA2RUR9 1427 aa6.71□□□□□ -1.34
LINC00540-201ENST00000611481 RRBP1Q9P2E9 1410 aaKnown RBP6.71□□□□□ -1.34
LINC00540-201ENST00000611481 GLDCP23378 1020 aa6.71□□□□□ -1.34
LINC00540-201ENST00000611481 KIR3DL1P43629 444 aa6.71□□□□□ -1.34
LINC00540-201ENST00000611481 PDE4CQ08493 712 aa6.71□□□□□ -1.34
LINC00540-201ENST00000611481 NKG7Q16617 165 aa6.71□□□□□ -1.34
LINC00540-201ENST00000611481 MYLIPQ8WY64 445 aa6.71□□□□□ -1.34
LINC00540-201ENST00000611481 KCNK12Q9HB15 430 aa6.71□□□□□ -1.34
LINC00540-201ENST00000611481 SNCAIPQ9Y6H5 919 aa6.71□□□□□ -1.34
LINC00540-201ENST00000611481 RGPD3A6NKT7 1758 aaPredicted RBP6.7□□□□□ -1.34
LINC00540-201ENST00000611481 COL14A1Q05707 1796 aaKnown RBP6.7□□□□□ -1.34
LINC00540-201ENST00000611481 RGPD4Q7Z3J3 1758 aa6.7□□□□□ -1.34
LINC00540-201ENST00000611481 CST3P01034 146 aaPredicted RBP6.7□□□□□ -1.34
LINC00540-201ENST00000611481 PTPN11Q06124 597 aaPredicted RBP6.7□□□□□ -1.34
LINC00540-201ENST00000611481 TMPRSS7Q7RTY8 843 aa6.7□□□□□ -1.34
LINC00540-201ENST00000611481 OSBPL7Q9BZF2 842 aa6.7□□□□□ -1.34
LINC00540-201ENST00000611481 TECPR2O15040 1411 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 DNAJC25-GNG10A0A024R161 153 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 ETV2O00321 342 aaPredicted RBP6.69□□□□□ -1.34
LINC00540-201ENST00000611481 CELA3AP09093 270 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 INHBBP09529 407 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 POLD1P28340 1107 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 MAPK1P28482 360 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 PRAMEF13Q5VWM6 474 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 PTF1AQ7RTS3 328 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 KCNN1Q92952 543 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 TMEM59LQ9UK28 342 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 SMG5Q9UPR3 1016 aaKnown RBP6.69□□□□□ -1.34
LINC00540-201ENST00000611481 USP19O94966 1318 aa6.69□□□□□ -1.34
LINC00540-201ENST00000611481 HK2P52789 917 aa6.68□□□□□ -1.34
LINC00540-201ENST00000611481 TNK2Q07912 1038 aa6.68□□□□□ -1.34
LINC00540-201ENST00000611481 TXNRD1Q16881 649 aa6.68□□□□□ -1.34
LINC00540-201ENST00000611481 RALGPS1Q5JS13 557 aa6.68□□□□□ -1.34
LINC00540-201ENST00000611481 WIPI1Q5MNZ9 446 aaPredicted RBP6.68□□□□□ -1.34
LINC00540-201ENST00000611481 ALG1LQ6GMV1 187 aa6.68□□□□□ -1.34
LINC00540-201ENST00000611481 PIWIL2Q8TC59 973 aaKnown RBP6.68□□□□□ -1.34
LINC00540-201ENST00000611481 XAGE3Q8WTP9 111 aa6.68□□□□□ -1.34
LINC00540-201ENST00000611481 CDC42BPGQ6DT37 1551 aa6.68□□□□□ -1.34
LINC00540-201ENST00000611481 ARHGEF10O15013 1369 aa6.68□□□□□ -1.34
LINC00540-201ENST00000611481 KIAA1210Q9ULL0 1709 aa6.67□□□□□ -1.34
LINC00540-201ENST00000611481 NUAK1O60285 661 aa6.67□□□□□ -1.34
LINC00540-201ENST00000611481 HPXP02790 462 aa6.67□□□□□ -1.34
LINC00540-201ENST00000611481 ESR1P03372 595 aa6.67□□□□□ -1.34
LINC00540-201ENST00000611481 SRFP11831 508 aa6.67□□□□□ -1.34
LINC00540-201ENST00000611481 BUD31P41223 144 aaPredicted RBP6.67□□□□□ -1.34
LINC00540-201ENST00000611481 CTSWP56202 376 aa6.67□□□□□ -1.34
LINC00540-201ENST00000611481 LINC00310P59036 64 aa6.67□□□□□ -1.34
LINC00540-201ENST00000611481 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.67□□□□□ -1.34
LINC00540-201ENST00000611481 GAL3ST3Q96A11 431 aa6.67□□□□□ -1.34
LINC00540-201ENST00000611481 PRDM11Q9NQV5 511 aa6.67□□□□□ -1.34
LINC00540-201ENST00000611481 GRK4P32298 578 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 MAPK8P45983 427 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 ERVFC1P60507 584 aa6.66□□□□□ -1.34
LINC00540-201ENST00000611481 ZNF326Q5BKZ1 582 aaKnown RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms