RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 ASGR1P07306 291 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 SLC3A2P08195 630 aaKnown RBP6.18□□□□□ -1.42
VRK3-226ENST00000602029 TSPY3P0CV98 308 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 TSPY8P0CW00 308 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 CSF2RAP15509 400 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 ADD2P35612 726 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 PBX2P40425 430 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 BEX3Q00994 111 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 FAAP100Q0VG06 881 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 ACVR2BQ13705 512 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 SNX17Q15036 470 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 RAB30Q15771 203 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 CCDC96Q2M329 555 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 ZNF792Q3KQV3 632 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 CCDC144BQ3MJ40 725 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 FAM47CQ5HY64 1035 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 C12orf60Q5U649 245 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 MFSD5Q6N075 450 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 C16orf86Q6ZW13 317 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 ARMCX2Q7L311 632 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 EEPD1Q7L9B9 569 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 OTOP2Q7RTS6 562 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 LRRC47Q8N1G4 583 aaKnown RBP6.18□□□□□ -1.42
VRK3-226ENST00000602029 PRPF38AQ8NAV1 312 aaKnown RBP6.18□□□□□ -1.42
VRK3-226ENST00000602029 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.18□□□□□ -1.42
VRK3-226ENST00000602029 TSEN34Q9BSV6 310 aaKnown RBP6.18□□□□□ -1.42
VRK3-226ENST00000602029 HIPK3Q9H422 1215 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 C11orf16Q9NQ32 467 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 TOMM22Q9NS69 142 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.18□□□□□ -1.42
VRK3-226ENST00000602029 THEGQ9P2T0 379 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 ZBTB47Q9UFB7 747 aaPredicted RBP6.18□□□□□ -1.42
VRK3-226ENST00000602029 FBXO40Q9UH90 709 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 DIS3Q9Y2L1 958 aaKnown RBP6.18□□□□□ -1.42
VRK3-226ENST00000602029 COG6Q9Y2V7 657 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 ARIH1Q9Y4X5 557 aaPredicted RBP6.18□□□□□ -1.42
VRK3-226ENST00000602029 ZNF318Q5VUA4 2279 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 MYH1P12882 1939 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 TCRBV5S4A2TA0A5A2 114 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 MYADML2A6NDP7 307 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 F5H6K3 240 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 SMIM22K7EJ46 135 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 DUSP11O75319 330 aaKnown RBP6.17□□□□□ -1.42
VRK3-226ENST00000602029 NDUFB10O96000 172 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 FGBP02675 491 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 ZNF865P0CJ78 1059 aaPredicted RBP6.17□□□□□ -1.42
VRK3-226ENST00000602029 ALAS1P13196 640 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 CYP2C18P33260 490 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 CCL23P55773 120 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 TNFAIP2Q03169 654 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 KLRC3Q07444 240 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 LRRFIP1Q32MZ4 808 aaKnown RBP6.17□□□□□ -1.42
VRK3-226ENST00000602029 C1orf53Q5VUE5 145 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 PPP2R2DQ66LE6 453 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 CTR9Q6PD62 1173 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 CXCL17Q6UXB2 119 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 NSMFQ6X4W1 530 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 ZNF365Q70YC5 407 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 TLK2Q86UE8 772 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 RPAP2Q8IXW5 612 aaPredicted RBP6.17□□□□□ -1.42
VRK3-226ENST00000602029 CCDC144CPQ8IYA2 1237 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.17□□□□□ -1.42
VRK3-226ENST00000602029 KHSRPQ92945 711 aaKnown RBP eCLIP6.17□□□□□ -1.42
VRK3-226ENST00000602029 ASB2Q96Q27 587 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 PBX4Q9BYU1 374 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 NACAP1Q9BZK3 213 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 LRRCC1Q9C099 1032 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 NKX2-4Q9H2Z4 354 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 ABHD16BQ9H3Z7 469 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 GPHNQ9NQX3 736 aaPredicted RBP6.17□□□□□ -1.42
VRK3-226ENST00000602029 DDX19BQ9UMR2 479 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 NOD1Q9Y239 953 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 HCN4Q9Y3Q4 1203 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 CACNA1GO43497 2377 aa6.17□□□□□ -1.42
VRK3-226ENST00000602029 PRRC2BQ5JSZ5 2229 aaKnown RBP6.17□□□□□ -1.42
VRK3-226ENST00000602029 LRRC37A2A6NM11 1700 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 CACNA1BQ00975 2339 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 FAM86C2PA6NEL3 165 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 TMEM232C9JQI7 657 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 ARVCFO00192 962 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 DYNC1LI2O43237 492 aaPredicted RBP6.16□□□□□ -1.42
VRK3-226ENST00000602029 GTPBP6O43824 516 aaPredicted RBP6.16□□□□□ -1.42
VRK3-226ENST00000602029 SMARCA5O60264 1052 aaPredicted RBP6.16□□□□□ -1.42
VRK3-226ENST00000602029 ADAMTS4O75173 837 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 SNAI1O95863 264 aaPredicted RBP6.16□□□□□ -1.42
VRK3-226ENST00000602029 TTLL1O95922 423 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 CHGBP05060 677 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 MYL3P08590 195 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 ATP5JP18859 108 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 SLC1A4P43007 532 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 MRE11P49959 708 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 RABGGTBP53611 331 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 IRX5P78411 483 aaPredicted RBP6.16□□□□□ -1.42
VRK3-226ENST00000602029 MRPS5P82675 430 aaKnown RBP6.16□□□□□ -1.42
VRK3-226ENST00000602029 PDE4BQ07343 736 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 UBE3CQ15386 1083 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 FSCN1Q16658 493 aaKnown RBP6.16□□□□□ -1.42
VRK3-226ENST00000602029 SLFN13Q68D06 897 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 ANKRD33Q7Z3H0 272 aa6.16□□□□□ -1.42
VRK3-226ENST00000602029 DEFB128Q7Z7B8 93 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms