RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 CDC37Q16543 378 aaPredicted RBP16.6■□□□□ 0.25
UPF1-211ENST00000600868 QRICH1Q2TAL8 776 aa16.6■□□□□ 0.25
UPF1-211ENST00000600868 SAMD1Q6SPF0 538 aaPredicted RBP16.6■□□□□ 0.25
UPF1-211ENST00000600868 HOMER1Q86YM7 354 aa16.6■□□□□ 0.25
UPF1-211ENST00000600868 REPS2Q8NFH8 660 aa16.6■□□□□ 0.25
UPF1-211ENST00000600868 DDX11Q96FC9 970 aa16.6■□□□□ 0.25
UPF1-211ENST00000600868 PNMA2Q9UL42 364 aa16.6■□□□□ 0.25
UPF1-211ENST00000600868 hCG_1642624A0A1W2PR95 340 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 ATP2A1O14983 1001 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 SCG2P13521 617 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 GJB2P29033 226 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 OAZ1P54368 228 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 TRAF1Q13077 416 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 PFKFB3Q16875 520 aaPredicted RBP16.59■□□□□ 0.25
UPF1-211ENST00000600868 PIBF1Q8WXW3 757 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 WASF1Q92558 559 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 DAXXQ9UER7 740 aaPredicted RBP16.59■□□□□ 0.25
UPF1-211ENST00000600868 KIF3AQ9Y496 699 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 CTDP1Q9Y5B0 961 aaPredicted RBP16.59■□□□□ 0.25
UPF1-211ENST00000600868 THSD7BQ9C0I4 1608 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 A0A0G2JMZ2 1700 aa16.59■□□□□ 0.25
UPF1-211ENST00000600868 MYH6P13533 1939 aa16.58■□□□□ 0.25
UPF1-211ENST00000600868 hCG_1984214I3L0E3 225 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 DTNBO60941 627 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 ALDH1A1P00352 501 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 ICAM1P05362 532 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 CYP2C8P10632 490 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 GCLCP48506 637 aaPredicted RBP16.58■□□□□ 0.24
UPF1-211ENST00000600868 SLC4A3P48751 1232 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 SNAP25P60880 206 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 POTEEQ6S8J3 1075 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 ZNF713Q8N859 430 aaPredicted RBP16.58■□□□□ 0.24
UPF1-211ENST00000600868 FAM184AQ8NB25 1140 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 IPO9Q96P70 1041 aaKnown RBP16.58■□□□□ 0.24
UPF1-211ENST00000600868 AMNQ9BXJ7 453 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 FOXD4L1Q9NU39 408 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 RABGAP1Q9Y3P9 1069 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 ZNF536O15090 1300 aa16.58■□□□□ 0.24
UPF1-211ENST00000600868 PPP1R11O60927 126 aaPredicted RBP16.57■□□□□ 0.24
UPF1-211ENST00000600868 TMEM132BQ14DG7 1078 aa16.57■□□□□ 0.24
UPF1-211ENST00000600868 FBXO11Q86XK2 927 aa16.57■□□□□ 0.24
UPF1-211ENST00000600868 FAM177A1Q8N128 213 aaPredicted RBP16.57■□□□□ 0.24
UPF1-211ENST00000600868 SMCR8Q8TEV9 937 aaPredicted RBP16.57■□□□□ 0.24
UPF1-211ENST00000600868 ALG1Q9BT22 464 aa16.57■□□□□ 0.24
UPF1-211ENST00000600868 CWC22Q9HCG8 908 aaKnown RBP16.57■□□□□ 0.24
UPF1-211ENST00000600868 SH3GLB2Q9NR46 395 aa16.57■□□□□ 0.24
UPF1-211ENST00000600868 ZNF214Q9UL59 606 aaPredicted RBP16.57■□□□□ 0.24
UPF1-211ENST00000600868 COL11A1P12107 1806 aaPredicted RBP16.56■□□□□ 0.24
UPF1-211ENST00000600868 ADGRA2Q96PE1 1338 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 CNMDO75829 334 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 TAF1CQ15572 869 aaPredicted RBP16.56■□□□□ 0.24
UPF1-211ENST00000600868 WWC2Q6AWC2 1192 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 CCDC174Q6PII3 467 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 HEATR3Q7Z4Q2 680 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 SPRYD3Q8NCJ5 442 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 RGS22Q8NE09 1264 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 ZFYVE28Q9HCC9 887 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 RAVER2Q9HCJ3 691 aaKnown RBP16.56■□□□□ 0.24
UPF1-211ENST00000600868 BARHL2Q9NY43 387 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 BTBD7Q9P203 1132 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 RBPJLQ9UBG7 517 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 PCDHA1Q9Y5I3 950 aa16.56■□□□□ 0.24
UPF1-211ENST00000600868 STXBP3O00186 592 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 CA12O43570 354 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 XBP1P17861 261 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 PDCP20941 246 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 STAT3P40763 770 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 PPP1R18Q6NYC8 613 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 CPXCR1Q8N123 301 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 GPKOWQ92917 476 aaPredicted RBP eCLIP16.55■□□□□ 0.24
UPF1-211ENST00000600868 AGBL1Q96MI9 1066 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 AIFM3Q96NN9 605 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 TEX13BQ9BXU2 312 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 MORF4L1Q9UBU8 362 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 CCPG1Q9ULG6 757 aa16.55■□□□□ 0.24
UPF1-211ENST00000600868 ABCB11O95342 1321 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 TLR2O60603 784 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 TKFCQ3LXA3 575 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 SNRNP48Q6IEG0 339 aaKnown RBP16.54■□□□□ 0.24
UPF1-211ENST00000600868 RIOX2Q8IUF8 465 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 GPRC5AQ8NFJ5 357 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 CCDC12Q8WUD4 166 aaPredicted RBP16.54■□□□□ 0.24
UPF1-211ENST00000600868 COA7Q96BR5 231 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 C8orf76Q96K31 380 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 PAGR1Q9BTK6 254 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 SPATC1LQ9H0A9 340 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 TXNRD2Q9NNW7 524 aa16.54■□□□□ 0.24
UPF1-211ENST00000600868 MRPL11Q9Y3B7 192 aaKnown RBP16.54■□□□□ 0.24
UPF1-211ENST00000600868 ESYT2A0FGR8 921 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 PDIA4P13667 645 aaKnown RBP16.53■□□□□ 0.24
UPF1-211ENST00000600868 COPB2P35606 906 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 NAPAP54920 295 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 ERVK-9P63128 1117 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 ERVK-24P63145 666 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 CRHR2Q13324 411 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 PLS1Q14651 629 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 FAM110CQ1W6H9 321 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 USH1GQ495M9 461 aa16.53■□□□□ 0.24
UPF1-211ENST00000600868 LARP1BQ659C4 914 aaKnown RBP16.53■□□□□ 0.24
UPF1-211ENST00000600868 TYW1BQ6NUM6 668 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms