RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 RCSD1Q6JBY9 416 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 KCTD1Q719H9 257 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 ARMCX2Q7L311 632 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 PCSK9Q8NBP7 692 aaKnown RBP13.51□□□□□ -0.25
HIF3A-217ENST00000600236 RILPL2Q969X0 211 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 LNPKQ9C0E8 428 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 PDLIM7Q9NR12 457 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 RNF146Q9NTX7 359 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 SYNRGQ9UMZ2 1314 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 ASB14A6NK59 587 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 FOXP2O15409 715 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 CLTBP09497 229 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 PCP11498 1178 aaKnown RBP13.5□□□□□ -0.25
HIF3A-217ENST00000600236 RRP12Q5JTH9 1297 aaKnown RBP13.5□□□□□ -0.25
HIF3A-217ENST00000600236 DCAF4Q8WV16 495 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 FAM227BQ96M60 508 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 GLT1D1Q96MS3 346 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 TRERF1Q96PN7 1200 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 IL17RBQ9NRM6 502 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 MTMR7Q9Y216 660 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 CEP290O15078 2479 aa13.5□□□□□ -0.25
HIF3A-217ENST00000600236 MROH7Q68CQ1 1323 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 CCDC171Q6TFL3 1326 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 COL11A1P12107 1806 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-217ENST00000600236 A0A0D9SFI3 127 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 DCDC2CA8MYV0 355 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 NMT2O60551 498 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 PQBP1O60828 265 aaKnown RBP13.49□□□□□ -0.25
HIF3A-217ENST00000600236 FGAP02671 866 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 FGRP09769 529 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 C6orf222P0C671 652 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-217ENST00000600236 HSPD1P10809 573 aaKnown RBP13.49□□□□□ -0.25
HIF3A-217ENST00000600236 TOP1P11387 765 aaKnown RBP13.49□□□□□ -0.25
HIF3A-217ENST00000600236 ALAS1P13196 640 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 CST5P28325 142 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-217ENST00000600236 ACLYP53396 1101 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 TLE2Q04725 743 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 NMIQ13287 307 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-217ENST00000600236 ERICH6BQ5W0A0 696 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 B4GALNT3Q6L9W6 998 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 CCDC174Q6PII3 467 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 BADQ92934 168 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 LENG1Q96BZ8 264 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-217ENST00000600236 CHMP4CQ96CF2 233 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 AGBL1Q96MI9 1066 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 RNF41Q9H4P4 317 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-217ENST00000600236 TCP11L1Q9NUJ3 509 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 PNMA2Q9UL42 364 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 CCPG1Q9ULG6 757 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 PRR12Q9ULL5 1215 aa13.49□□□□□ -0.25
HIF3A-217ENST00000600236 ZNF536O15090 1300 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 RAG1P15918 1043 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 NOVP48745 357 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 NT5C2P49902 561 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 CCDC144BQ3MJ40 725 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 MFSD6Q6ZSS7 791 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 CHD1LQ86WJ1 897 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 SMC5Q8IY18 1101 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 CCDC144CPQ8IYA2 1237 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 FAM133AQ8N9E0 248 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 KLHDC9Q8NEP7 349 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 TOX2Q96NM4 488 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 A1CFQ9NQ94 594 aaKnown RBP13.48□□□□□ -0.25
HIF3A-217ENST00000600236 INCENPQ9NQS7 918 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 TMEM39AQ9NV64 488 aa13.48□□□□□ -0.25
HIF3A-217ENST00000600236 ELP1O95163 1332 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 TRIM43BA6NCK2 446 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 HIP1O00291 1037 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 ICAM1P05362 532 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 GJA9P57773 515 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 KCNA10Q16322 511 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 AKNAD1Q5T1N1 836 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 ZNF697Q5TEC3 545 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 FAM109BQ6ICB4 259 aaPredicted RBP13.47□□□□□ -0.25
HIF3A-217ENST00000600236 NOL8Q76FK4 1167 aaKnown RBP13.47□□□□□ -0.25
HIF3A-217ENST00000600236 Q7L0L9 218 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 ANKRD33Q7Z3H0 272 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 SLC17A8Q8NDX2 589 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 VTI1AQ96AJ9 217 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 TRIM43Q96BQ3 446 aaPredicted RBP13.47□□□□□ -0.25
HIF3A-217ENST00000600236 FGD4Q96M96 766 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 TTC14Q96N46 770 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 DIAPH3Q9NSV4 1193 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 STXBP5LQ9Y2K9 1186 aa13.47□□□□□ -0.25
HIF3A-217ENST00000600236 A0A0U1RQG5 324 aaPredicted RBP13.46□□□□□ -0.25
HIF3A-217ENST00000600236 KIAA0355O15063 1070 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 ZEB2O60315 1214 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 ASGR1P07306 291 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 SDSP20132 328 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 HAND2P61296 217 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 CNTN2Q02246 1040 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 TNFAIP2Q03169 654 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 SHHQ15465 462 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 CCDC178Q5BJE1 867 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 GNASQ5JWF2 1037 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 SYDE2Q5VT97 1194 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 BTNL9Q6UXG8 535 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 NSMFQ6X4W1 530 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 SH3RF1Q7Z6J0 888 aa13.46□□□□□ -0.25
HIF3A-217ENST00000600236 ZNF589Q86UQ0 364 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms