RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PBX2P40425 430 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 ACLYP53396 1101 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 KCNA10Q16322 511 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 TMED8Q6PL24 325 aaPredicted RBP10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 RASGRP2Q7LDG7 609 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 RPAP2Q8IXW5 612 aaPredicted RBP10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 OSBP2Q969R2 916 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 KIFC2Q96AC6 838 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 FGD4Q96M96 766 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 SLF1Q9BQI6 1058 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 KANSL2Q9H9L4 492 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 GOPCQ9HD26 462 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 STARD7Q9NQZ5 370 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 HOMER2Q9NSB8 354 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 TACC3Q9Y6A5 838 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 CFAP47Q6ZTR5 3102 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 TRIOO75962 3097 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 GSG1L2A8MUP6 293 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 PRR33A8MZF0 331 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 F5H6K3 240 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 M0R2C6 588 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 KIAA0355O15063 1070 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 ST18O60284 1047 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 RAB11FIP3O75154 756 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 HMMRO75330 724 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 ACRP10323 421 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 AKR1A1P14550 325 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 SNAP25P60880 206 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 FPGSQ05932 587 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 KLRC3Q07444 240 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 UBE3CQ15386 1083 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 C1orf53Q5VUE5 145 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 AMOTL1Q8IY63 956 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 DDX11Q96FC9 970 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 STRBPQ96SI9 672 aaKnown RBP10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 PPP1R12CQ9BZL4 782 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 KCNH6Q9H252 994 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 CLIP2Q9UDT6 1046 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 ISY1Q9ULR0 285 aaKnown RBP10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 CNPY2Q9Y2B0 182 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 ACACBO00763 2458 aa10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 KMT2BQ9UMN6 2715 aaPredicted RBP10.36□□□□□ -0.75
SHKBP1-220ENST00000599716 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 C6orf222P0C671 652 aaPredicted RBP10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 BEX3Q00994 111 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 CNTN2Q02246 1040 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 TMEM63BQ5T3F8 832 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 CCSAPQ6IQ19 270 aaPredicted RBP10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 C16orf59Q7L2K0 433 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 KLHDC9Q8NEP7 349 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 VTI1AQ96AJ9 217 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 TIFAQ96CG3 184 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 CEP95Q96GE4 821 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 DDRGK1Q96HY6 314 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 SEC62Q99442 399 aaKnown RBP10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 TEX13BQ9BXU2 312 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 MKNK2Q9HBH9 465 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 ARPP21Q9UBL0 812 aaPredicted RBP10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 FAM184BQ9ULE4 1060 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 DDX19BQ9UMR2 479 aa10.35□□□□□ -0.75
SHKBP1-220ENST00000599716 DNAJC25-GNG10A0A024R161 153 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 ASGR1P07306 291 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 CSF2RAP15509 400 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 ACVR2BQ13705 512 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 CCDC85BQ15834 202 aaPredicted RBP10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 CCDC144BQ3MJ40 725 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 LRRCC1Q9C099 1032 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 INCENPQ9NQS7 918 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 TBX21Q9UL17 535 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 MTMR7Q9Y216 660 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 DIS3Q9Y2L1 958 aaKnown RBP10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 ROBO3Q96MS0 1386 aa10.34□□□□□ -0.75
SHKBP1-220ENST00000599716 UMODL1Q5DID0 1318 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 DMDP11532 3685 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 GVINP1Q7Z2Y8 2422 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 IGKV6D-41A0A0C4DH26 115 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 DCDC2CA8MYV0 355 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 CTAGE5O15320 804 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 GPAA1O43292 621 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 TIMP1P01033 207 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 APPP05067 770 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 CYP2C18P33260 490 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 TDO2P48775 406 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 CCDC129Q6ZRS4 1044 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 ARMCX2Q7L311 632 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 ANKRD33Q7Z3H0 272 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 CCDC144CPQ8IYA2 1237 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 ANKRD35Q8N283 1001 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 PRPF38AQ8NAV1 312 aaKnown RBP10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 OTUD7AQ8TE49 926 aaPredicted RBP10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 PPP1R13LQ8WUF5 828 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 AGBL1Q96MI9 1066 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 PURBQ96QR8 312 aaKnown RBP10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 PRDM12Q9H4Q4 367 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 ECHDC1Q9NTX5 307 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 NYAP2Q9P242 653 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 NRBP1Q9UHY1 535 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms