RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 DNAJB8Q8NHS0 232 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 NKX2-4Q9H2Z4 354 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 SUGCTQ9HAC7 445 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 PCOLCE2Q9UKZ9 415 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 NOB1Q9ULX3 412 aaKnown RBP10.05□□□□□ -0.8
VMP1-208ENST00000588617 PCDHA9Q9Y5H5 950 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 FHOD1Q9Y613 1164 aa10.05□□□□□ -0.8
VMP1-208ENST00000588617 CPP00450 1065 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 BPIP17213 487 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 SRSF11Q05519 484 aaKnown RBP10.04□□□□□ -0.8
VMP1-208ENST00000588617 OS9Q13438 667 aaPredicted RBP10.04□□□□□ -0.8
VMP1-208ENST00000588617 HDAC1Q13547 482 aaPredicted RBP10.04□□□□□ -0.8
VMP1-208ENST00000588617 PRSS53Q2L4Q9 553 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 KIAA1211Q6ZU35 1233 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 ACAD11Q709F0 780 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 CDH24Q86UP0 819 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 FIBCD1Q8N539 461 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 SYTL5Q8TDW5 730 aaPredicted RBP10.04□□□□□ -0.8
VMP1-208ENST00000588617 MIPEPQ99797 713 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 ZNF180Q9UJW8 692 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 SPEF1Q9Y4P9 236 aa10.04□□□□□ -0.8
VMP1-208ENST00000588617 AQP7O14520 342 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 APBA3O96018 575 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 MYL1P05976 194 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 AMPD1P23109 780 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 GRB10Q13322 594 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 COL9A3Q14050 684 aaPredicted RBP10.03□□□□□ -0.8
VMP1-208ENST00000588617 SART3Q15020 963 aaKnown RBP10.03□□□□□ -0.8
VMP1-208ENST00000588617 SKOR2Q2VWA4 1001 aaPredicted RBP10.03□□□□□ -0.8
VMP1-208ENST00000588617 NBPF9Q3BBW0 867 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 SLC35F1Q5T1Q4 408 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 SYDE2Q5VT97 1194 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 ZCCHC8Q6NZY4 707 aaKnown RBP10.03□□□□□ -0.8
VMP1-208ENST00000588617 LETMD1Q6P1Q0 360 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 ASXL2Q76L83 1435 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 ZDHHC15Q96MV8 337 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 RTFDC1Q9BY42 306 aaPredicted RBP10.03□□□□□ -0.8
VMP1-208ENST00000588617 GSX1Q9H4S2 264 aaPredicted RBP10.03□□□□□ -0.8
VMP1-208ENST00000588617 ARNT2Q9HBZ2 717 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 CYP26B1Q9NR63 512 aa10.03□□□□□ -0.8
VMP1-208ENST00000588617 APOBEC2Q9Y235 224 aaKnown RBP10.03□□□□□ -0.8
VMP1-208ENST00000588617 GPR55Q9Y2T6 319 aaPredicted RBP10.03□□□□□ -0.8
VMP1-208ENST00000588617 COL17A1Q9UMD9 1497 aaPredicted RBP10.03□□□□□ -0.8
VMP1-208ENST00000588617 GABRDO14764 452 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 VAMP4O75379 141 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 AMPD2Q01433 879 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 GUCY1A3Q02108 690 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 HLTFQ14527 1009 aaKnown RBP eCLIP10.02□□□□□ -0.81
VMP1-208ENST00000588617 MLC1Q15049 377 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 DDX53Q86TM3 631 aaKnown RBP10.02□□□□□ -0.81
VMP1-208ENST00000588617 FBXO11Q86XK2 927 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 DCAF4Q8WV16 495 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 ASPNQ9BXN1 380 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 PRDM14Q9GZV8 571 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 FAM105AQ9NUU6 356 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 SAMD15Q9P1V8 674 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 ACTL7BQ9Y614 415 aa10.02□□□□□ -0.81
VMP1-208ENST00000588617 KRBA1A5PL33 1030 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 M0R2C6 588 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 SCG5P05408 212 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 ETV3P41162 512 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 ANKLE2Q86XL3 938 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 RNF141Q8WVD5 230 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 C1orf159Q96HA4 380 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 FBXL18Q96ME1 805 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 DSCC1Q9BVC3 393 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 GFOD1Q9NXC2 390 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 SF3B6Q9Y3B4 125 aaKnown RBP10.01□□□□□ -0.81
VMP1-208ENST00000588617 TNKSO95271 1327 aa10.01□□□□□ -0.81
VMP1-208ENST00000588617 GOLGA6CA6NDK9 693 aa10□□□□□ -0.81
VMP1-208ENST00000588617 GOLGA6BA6NDN3 693 aa10□□□□□ -0.81
VMP1-208ENST00000588617 GOLGA6DP0CG33 693 aa10□□□□□ -0.81
VMP1-208ENST00000588617 IL2P60568 153 aa10□□□□□ -0.81
VMP1-208ENST00000588617 DPY19L1Q2PZI1 675 aa10□□□□□ -0.81
VMP1-208ENST00000588617 SYCP2LQ5T4T6 812 aa10□□□□□ -0.81
VMP1-208ENST00000588617 FAM102BQ5T8I3 360 aa10□□□□□ -0.81
VMP1-208ENST00000588617 IQSEC1Q6DN90 963 aa10□□□□□ -0.81
VMP1-208ENST00000588617 STYK1Q6J9G0 422 aa10□□□□□ -0.81
VMP1-208ENST00000588617 FDX2Q6P4F2 183 aa10□□□□□ -0.81
VMP1-208ENST00000588617 SLC4A10Q6U841 1118 aa10□□□□□ -0.81
VMP1-208ENST00000588617 KCNT2Q6UVM3 1135 aa10□□□□□ -0.81
VMP1-208ENST00000588617 KIF18BQ86Y91 864 aa10□□□□□ -0.81
VMP1-208ENST00000588617 TCEAL8Q8IYN2 117 aa10□□□□□ -0.81
VMP1-208ENST00000588617 NXPE1Q8N323 547 aa10□□□□□ -0.81
VMP1-208ENST00000588617 CAMKK2Q96RR4 588 aa10□□□□□ -0.81
VMP1-208ENST00000588617 GOLGA6AQ9NYA3 693 aa10□□□□□ -0.81
VMP1-208ENST00000588617 COMMD10Q9Y6G5 202 aa10□□□□□ -0.81
VMP1-208ENST00000588617 ZNF891A8MT65 544 aaPredicted RBP9.99□□□□□ -0.81
VMP1-208ENST00000588617 OIP5O43482 229 aa9.99□□□□□ -0.81
VMP1-208ENST00000588617 FBXO21O94952 628 aa9.99□□□□□ -0.81
VMP1-208ENST00000588617 TIAF1O95411 115 aa9.99□□□□□ -0.81
VMP1-208ENST00000588617 ZSCAN20P17040 1043 aaPredicted RBP9.99□□□□□ -0.81
VMP1-208ENST00000588617 NAT1P18440 290 aa9.99□□□□□ -0.81
VMP1-208ENST00000588617 ITIH2P19823 946 aa9.99□□□□□ -0.81
VMP1-208ENST00000588617 SNW1Q13573 536 aaKnown RBP9.99□□□□□ -0.81
VMP1-208ENST00000588617 KSR2Q6VAB6 950 aa9.99□□□□□ -0.81
VMP1-208ENST00000588617 MTDHQ86UE4 582 aaKnown RBP9.99□□□□□ -0.81
VMP1-208ENST00000588617 C2CD4AQ8NCU7 369 aaPredicted RBP9.99□□□□□ -0.81
VMP1-208ENST00000588617 MPHOSPH6Q99547 160 aaKnown RBP9.99□□□□□ -0.81
VMP1-208ENST00000588617 CRTAC1Q9NQ79 661 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms